| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4556 |
|---|
| Symbol | |
|---|
| ID | 8728320 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | - |
|---|
| Start bp | 5524515 |
|---|
| End bp | 5526545 |
|---|
| Gene Length | 2031 bp |
|---|
| Protein Length | 676 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003389335 |
|---|
| Protein GI | 284039405 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000198635 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGTTA CCTTGTTTAT CGTCGTTCTT TCGCTTCTTC CTATTCACTT AAGCGCACAA
TCGCCTGCCA GGGCACGTAA GCATCCTGCC CCAAAACGGT ATTTTGGGCT TCACTTCGAT
TTCCATGCTG GACGCAATGA CTCGTTGATT GGTCGAAACC TGTCGGAACG GGGCCTTGAT
TCATTGCTGA CGGCCGTCAA GCCCGATTTT ATTCAGATCG ACTGCAAAGG ACATCCGGGG
GTGTCGAGTT ACCCCTCAAA GGTGGCCAAT GCGACTGTAG CTCCACATGT TGTTAAGGAC
CCCCTGGCGT TTTATCGGGC TGTGACGCGC AGGCATGGCG TTGGGTTGTA TCTGCATTAT
TCGGGTGTAT ACGACGATGC TGTACTGGCC AAACACCCCG GCTGGGCGGC TGTAAAAGCC
GACGGCTCCA TGAATATGTC CAAAGCATCG GTCCACGGCC CCTATGTCGA CTCGCTGTTG
ATTCCGCAAC TCAACGAACT GGCCGACTAT GGTGCCGATG GCGTATGGGT TGATGGCGAG
TGCTGGGCTA CGGTGCCGGA TTATTCACCA GCCGCCCTGG CGAAATTTCG GGCCGAAACG
GGGGGGCAAA CGGTGCCACG GTCGACGAAA GACGTTGGCT ATGGGGCATT CAACGAGTTT
GCCCGGCGGT CGTTCATCCG GTACATCGGG AAGTATGTCG ATGCGGTACA TCGCCACCAG
CCCACGTTCC GGATTGCGTC AAACTGGGCC TATTCGTCCA TGATGCCCGA ACCCATCACA
ACAAATGTTG ATTATCTGTC GGGCGATCTA ACGCCCAGCA ACAGCGTAAA TTCGGCTGCG
CTGGAAGGGC GAGTTATGGC CGCACAAGGA CAGCTTTATA AAAAGCCCTG GGATTTGATG
TCGTGGAGCT TTTGGTACGA ATTCAACCCG GTACAGCGGC AGGGTGATCA GAAGTCGGCG
GTACATCTGA TGCAGGAAGC GGCCGAAATC ATTGCACTCG GCGGTGGGTT TCAGGCCTAC
TATCAACAAA GCCGGGATGC CGCCCTACCC CGGCGCGAAC AGCCGGTCAT GGCTGCGCTG
AGCCGGTTTG TACGGGAAAG GCAACCCTTT TGCGAGGGCA GCACGCCCAT ACCGCAGATC
GCCATGCTGT ATGCCAACAC GACCGTTCGG GCGTTTAACC AGTCATTGTT CGGGAATGGA
CAAACGCACC GGATTAGCGG AGTGCTGACC GCCCTTCTGG ATGCTCAGTT GCCTGTTGAG
GTGCTGGCCG AGCATCATCT GCGTGGACGA TTAAGCCAGT ACCCCGTCAT TGTGGTGTCG
CAGCAGGATT CACTCGACCC GGCGTTCCGG CGTGAATTGC TCGACTACGC TCGTCAGGGT
GGTCATTTGT TGCTGATCGG TGCCAAAACA ACCCGCTTGT TTGCCGATGA ACTAGGCGTT
GTACCAATGC AGGAAAGTTC AGCTGGTCCG AAGTGGGTGT TGAACAACGG CGCGTCGATT
GTGCTGACCG GCCCGTTTCA GCCTGTGCGT ATAAGCAGCC CGGATACAAA GCCCATTGGG
AACTTCATGC AAACGGAAGC AGGTGGCCCG GTGCCGGGCG TTATCGCTAC AGAAACGCAG
TTTGGTAAAG GAAAACTGAC AGCTATCTAC GCTGACTTGA GCCGGGATTA CGACAAACAC
CAATCCAGCC GACTGCGTGA TTTTATCGCG TCGTTTACTC GGCCATTACT ACCCAATCCG
GTGGTTGAGG TAAACGGCTC GCATCTGGTG CACGTTGTCC TGAACCGGCA ACGCGACCGG
CTCGCCGTGA ACCTGATCAA CACCGGAGGC CGCCATGCCG ACCCGCAGGT ATTTACGTAC
GACGAAGTGC CGCCCCTGAC TAACCTCACC GTTCGACTTC GTCTGGATAA GAAACCAAAA
CGCATCGTTC AGCAACCCGA AAACAAAGTT TTGCCCGTTC GCTATGAAAA AGGAGTTGCC
ACCGTGACCG TGCCACAACT GGCGCTGCAT TCGGTTTTGG TGGTTGAATG A
|
|---|
| Protein sequence | MKVTLFIVVL SLLPIHLSAQ SPARARKHPA PKRYFGLHFD FHAGRNDSLI GRNLSERGLD
SLLTAVKPDF IQIDCKGHPG VSSYPSKVAN ATVAPHVVKD PLAFYRAVTR RHGVGLYLHY
SGVYDDAVLA KHPGWAAVKA DGSMNMSKAS VHGPYVDSLL IPQLNELADY GADGVWVDGE
CWATVPDYSP AALAKFRAET GGQTVPRSTK DVGYGAFNEF ARRSFIRYIG KYVDAVHRHQ
PTFRIASNWA YSSMMPEPIT TNVDYLSGDL TPSNSVNSAA LEGRVMAAQG QLYKKPWDLM
SWSFWYEFNP VQRQGDQKSA VHLMQEAAEI IALGGGFQAY YQQSRDAALP RREQPVMAAL
SRFVRERQPF CEGSTPIPQI AMLYANTTVR AFNQSLFGNG QTHRISGVLT ALLDAQLPVE
VLAEHHLRGR LSQYPVIVVS QQDSLDPAFR RELLDYARQG GHLLLIGAKT TRLFADELGV
VPMQESSAGP KWVLNNGASI VLTGPFQPVR ISSPDTKPIG NFMQTEAGGP VPGVIATETQ
FGKGKLTAIY ADLSRDYDKH QSSRLRDFIA SFTRPLLPNP VVEVNGSHLV HVVLNRQRDR
LAVNLINTGG RHADPQVFTY DEVPPLTNLT VRLRLDKKPK RIVQQPENKV LPVRYEKGVA
TVTVPQLALH SVLVVE
|
|---|
| |