| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_4228 |
|---|
| Symbol | |
|---|
| ID | 8727987 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 5096939 |
|---|
| End bp | 5098924 |
|---|
| Gene Length | 1986 bp |
|---|
| Protein Length | 661 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | |
|---|
| Product | Lanthionine synthetase C family protein |
|---|
| Protein accession | YP_003389012 |
|---|
| Protein GI | 284039082 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTTTA AAAAAGTTAA TACCTTATTA CAACCTGAAG ATGCATCAAT TTTCTTATCA
GAAGCAATAT CAATTGGAAC GTGGACTATT GAACAAGCGA AACGGTCTGA GCAAGGTATC
TTCTGGACGA TGTACTATAA TGATGATGAC TTAATCTCAG AAGCGGCAAC AACGCATTTA
TACAGTGGAA CTGCGGGAGT TATTCATTTC TTAATGGAAT TATATCTAGT TACTAACGAC
CCTAATCTTG AAGAATATAT TCATGGTGGC TTAAGATGGT TAATCCATCA TTCCAAATCG
AGTGGTCTTG ATTCATATAG CATGTTTACA GGACGCTTAT CTGTGGCACT ATGCTTTTTG
CGTGCAGCAT CACAATTCAA CAATCCCAAT TATCTTAATT TTGCATATTC TTCCCTAGAA
TCTGTGGAAA GTTTTCTAAC GAGTTCGACA AACGATTTAA TTAATGGTAT ATCGGGTTGC
TTACTTGGCT TAGTACATTT TTATCACCAT ACAAAAGATG AATCAATTTT ACCATTAGTA
TTCAAGTTTA TTGACAGACT TCTTCAAAAC TGCCGATTTC TTAGAGATAG TGTATATTGG
GATTTAACAA AAGACCATAC TCAACCATTG TGTGGTTTTT CTCACGGTCT TGCAGGAATT
GGATTTTGTC TTCTTGAAGT AGGGCACTAT TTTAATTTAC CATTTCTTAC TGATTTGGCC
CAAAAAACTT ACCAAGCTGA GAACTATCAT TTTCAACCTC ACAAATTGAA CTGGCCTGAT
TTTCGAAAAG GCAGTTATTC AAAAAAGGAT GAAAATGAAT TTCGCCGTTC CCTAATCAAC
AAAGACTTAT ATCCATTTAT TAAGGAAAAG TTTATGTTTG CATGGTGTCA CGGCGCCCCC
GGTATCGGGT TGTCAAGGCT TCGAGCCCAT CAGATTACTG GCAACAAAAC TTGGTTAAAC
GATTTAGAAA TGGCTATCAC GTCTACTAGT CATGATTTAG ATAATACCGG TATAAATTCC
TATTGCTTAT GTCACGGAGG TGCAGGCAAT GCCGACCTGT TGATCGAGGC ATTTTTATAT
ACTAACAAAC AAGACTATTT TGAGGCCGCG CTTAAGGTTG GTAAAAAAGC GCTTCAACAA
AAAGAGCAAC TAGGGTATTA CCGCCCTGGT TCTTTAACTG ACAAGCCTGA TGCTGCTCTT
TTCACCGGTA CATCTGGGGT TGGCCTTTTC TACTTGCGCT TGCTATTCCC ATCGAGCATC
CACTCTGTTT TATATCCAGT ATTACCTAAG CCTGAAATGC AATTTCACCT TAATAATAAC
CTATGGAGTG AAAAAAAAGC ATCTTTCAAT CTAGTTAAAG CTTCTTTTAG TAATGCAACG
AATTATTTAA ATTACAAGGG CATCAATGAA ATTGGTCTTC CGATTGAATC AATTCTTGGA
ATTAATTTTC TTTCAAAAAC CACCCTTAAA CATCATCTCA TCTGGATACG ATTAAAGTTA
TTCAAAAAAG ACTATAAAAA ATATGTATCT CTGCTAAAGC TAGACATAAA ACTATTCAGA
TCCAGGCTAA GTTTCGAGTC AAACAATGTA CTTTCCTATA CAAAGTATAG ATATCGCCTT
GAACAGTCGC AATATCTTTT GTCAAAAGTT GAAAATCACA TCAACACTTT CTTTAAACTT
ACCGCAGATG CCTCTTTAGT ACAGAATTTG ACAGAGCTAA ATGAAATCCA ATATTTTCTT
GTTTACTATA ATCCTTACAT TAACTCAACT TATTCAGTTA TTAAAATTTC ATCCCTCTCA
AATGCCATTT TGACCTATTT GTTGACTAGT AATACACTTA CATCGACTGT TAGATACGTA
GATGAACTTT TGGAAGATAA TCATGACATT AGCCTTTTGC AAATTTCTGA GTTAGTTAGA
AATCAACTTT GGGAATTTAT TAAAATGGGG CTTCTCGAGG AGTCATCAAC AGTAAATTCA
CAATAA
|
|---|
| Protein sequence | MVFKKVNTLL QPEDASIFLS EAISIGTWTI EQAKRSEQGI FWTMYYNDDD LISEAATTHL
YSGTAGVIHF LMELYLVTND PNLEEYIHGG LRWLIHHSKS SGLDSYSMFT GRLSVALCFL
RAASQFNNPN YLNFAYSSLE SVESFLTSST NDLINGISGC LLGLVHFYHH TKDESILPLV
FKFIDRLLQN CRFLRDSVYW DLTKDHTQPL CGFSHGLAGI GFCLLEVGHY FNLPFLTDLA
QKTYQAENYH FQPHKLNWPD FRKGSYSKKD ENEFRRSLIN KDLYPFIKEK FMFAWCHGAP
GIGLSRLRAH QITGNKTWLN DLEMAITSTS HDLDNTGINS YCLCHGGAGN ADLLIEAFLY
TNKQDYFEAA LKVGKKALQQ KEQLGYYRPG SLTDKPDAAL FTGTSGVGLF YLRLLFPSSI
HSVLYPVLPK PEMQFHLNNN LWSEKKASFN LVKASFSNAT NYLNYKGINE IGLPIESILG
INFLSKTTLK HHLIWIRLKL FKKDYKKYVS LLKLDIKLFR SRLSFESNNV LSYTKYRYRL
EQSQYLLSKV ENHINTFFKL TADASLVQNL TELNEIQYFL VYYNPYINST YSVIKISSLS
NAILTYLLTS NTLTSTVRYV DELLEDNHDI SLLQISELVR NQLWEFIKMG LLEESSTVNS
Q
|
|---|
| |