| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_3903 |
|---|
| Symbol | |
|---|
| ID | 8727661 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 4681716 |
|---|
| End bp | 4682699 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | |
|---|
| Product | intradiol ring-cleavage dioxygenase |
|---|
| Protein accession | YP_003388692 |
|---|
| Protein GI | 284038762 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.0806083 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAAAC AACCAAACAT CCCCCGTCGA AGCTGGCTCC GCTTGAGCGT TGGCCTGGCT
GCCGGTACGG TCGGCACGGC GTTTACGCTG ACCGATGCCG ACAAAGACCG TTGCGCCGTT
ACGCCCCGTC AGGAACTTGG GCCATTCCCA ACCATGCAGT TCCGTTCGCA GGCAGACCAT
GACGTTGATC TCACGCAGCT GACCGGACAG GCAGGCATCG CTACGGGTGA GGTCATCATC
GTGAAGGGTC AGATACTCGA CACCAGTTGC CAGCCTATTG CCGGGGCTAT TGTTGAGATT
TGGCAGGCTA ATCACCACGG CAAATACCGC CACGAGTATG GCGACTCCGG CCAGTCGGAC
CCTAACTTTC AGGGCTGGGC GCAGGCGGTT ACCAATGCAA ACGGAGAATA CCAGTTCAAA
ACGATATTGC CGGGATTGTA TGGTCATCGG GCGCGGCATA TTCACTATAA AGTGGCCAAA
CGCGGCTACC ACGAACTGGT TACGCAACTT TACTTCGATG GCGAGGACCG CAACAGGACC
GACGAGATTC TGAACTCGTT TACCCACGAA GAACAAATGC GGCTGACGGG TAAACTAGAC
AAAACTACCC CAACGCCAAC CATCGAGTTC ACGATCAACC TCGACAAGGT GCAGGTGGGC
GCACTGCCCG CGAAGGTCCT GGCCGACTAC ACGGGCGAGT ATGTATTGCA GGCGAAAGGC
ACCGACTACG AACAGCTTCT AAATACGTTT CTGGGCGGAC CCTACGACAA GGTTACCATG
CAGGTGGAGC AACAGGATGG TCTGCTTTAT CTGACTACCA CCAAGGCTCC TAAAGCCGAA
CTGTTCTGGA AAGCCAAAGA TCAGTTCGAT GCGGCTTCAT TCTACGACAC GGTGCTGACG
TTTGGCCGCA ATGCCGCCGG TAAGGTAGTG TCGGCCACGT TTCGGGCGCG GGATGGACAA
GAGTTGCACG GCACACGAGT GTAG
|
|---|
| Protein sequence | MEKQPNIPRR SWLRLSVGLA AGTVGTAFTL TDADKDRCAV TPRQELGPFP TMQFRSQADH
DVDLTQLTGQ AGIATGEVII VKGQILDTSC QPIAGAIVEI WQANHHGKYR HEYGDSGQSD
PNFQGWAQAV TNANGEYQFK TILPGLYGHR ARHIHYKVAK RGYHELVTQL YFDGEDRNRT
DEILNSFTHE EQMRLTGKLD KTTPTPTIEF TINLDKVQVG ALPAKVLADY TGEYVLQAKG
TDYEQLLNTF LGGPYDKVTM QVEQQDGLLY LTTTKAPKAE LFWKAKDQFD AASFYDTVLT
FGRNAAGKVV SATFRARDGQ ELHGTRV
|
|---|
| |