| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_2106 |
|---|
| Symbol | |
|---|
| ID | 8725844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 2543116 |
|---|
| End bp | 2544792 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | |
|---|
| Product | glycoside hydrolase family 10 |
|---|
| Protein accession | YP_003386940 |
|---|
| Protein GI | 284037010 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.390174 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.187838 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATCTC TAAAAACGAT AACCCTGCTA ACGCTCCTCA CGGCGCTGTC GGCGGCCTGT
CGGACCGATA AAAGCGAGTT TGTGCTGGCT AAGCCCGAAA GCGTGGCCAC GCTGGAACCG
ATCAATAAGT ATGACGCACT GAAGACCTAT CTCAACACGG GCGACAATCC CAACTTTAAG
CTGGGGGCGG GCGTTGGATT GTCCGATTAC CTGGCGAAGG GCGTGGTGTA CCGGATGATC
AACAGCAACT TTAACGACAT CACCCTTGGT TACGAAATGA AGCACGGGGC CGTTGTCAAA
GCCGATGGTA AGCTGGATCT GACCAACGTG ACCAACCTGC TCAAGGCCGC TCAGGCGGCT
GGCGTTAGCG TGTATGGGCA TACACTCGCC TGGCACGCCA ACCAGAACGC GTCCTACCTC
AACAGCCTGT TGCTGACCGG TGTCGACTTC GACCCGGCAG ATAAACGCGT GAATTATGCG
AACGGCTCCT TCGAACAGAA CCAGACTGGG TGGAACTCCT GGGGTGGCTC AAGCACCCGC
GACATTATCA ACACGGGGCT GGTGGGCACC AAAAGCCTGC GTTTTACGCA CACATCCAAA
GCCAATCCCT GGGATGCCCA GATCGCCCTC GACTTCAGCC CGTCGCCAAT ACCCGTGGGC
GAGTACACCC TGTCGTTCTT CGTCCGGTCC GATGCGCCCG GCAAATTCCG CTGCTCAACG
GTGGGTAGCG GTGCCGACGT GCAGTACCAG CCCGACGTAA TCACGACCAC AACCTGGCAG
TATGTGGAAT GGGACATTAA ATCGGCGGGT ACCCTTTCGG CGCTACGCTA CGACATGGGG
ACCACACCCG GAACGTATTA CCTCGACGAG GTTCGGCTGA ATCCTAAGTC AACCCTTTAT
AAAAAGCCCG TTATCCTTCA GCTGAGCGCA GACGAAAAAA CGCGGATCAT CGGGGGCGCG
ATGGACAAAT GGATTTCGGA GATGGTGACC CAAACCAAGC CATATGTAAA GGCGTGGGAC
GTGGTCAATG AGCCTATGGA CGATGCCAAA CCCAGTACGC TGAAAACCGC AGCGGGTCGG
GCTGCTCTGG CCACGGACGA ATTTTACTGG CAGGATTACC TGGGCAAAGA TTACGCCGTT
CGGGCCTTTA AACTGGCTCG TCAGAATGGC AATGCAGACG ATATACTGTT TATCAATGAC
TATAACCTGG AATACGATCT GAACAAGTGC CAGGGATTGA TCGACTACGT CAGGTACATT
GAAGCCAACG GAGCTAAAGT AGACGGCATC GGCACGCAGA TGCACATGAG CCTCGATACC
AAACGGGAAA ATATCGATCA GATGTTTCGG CTGCTGGCGG CCACGGGCAA AATGATCAAG
ATCTCTGAGA TGGACATAGG TATTGGTACG GGAATCAAGA CAGCCGCAGC TACGCCAGCC
CAGTACAAAG CACAGGCCGA GTTATACGAG TACACGATCA AAAAGTACAT GGAGCTCGTA
CCGGCCAAAC AACGCTACGG CATCACGATG TGGAGCCCGA TGGATAGCCC CGACGGGTCC
TCGTGGCGGG CTGGTGAGCC AATTGGCCTC TGGAAACGCG ATTACACCCG AAAACAGGCT
TATGGTGGTT TCGCCAATGG GCTGGCGGGC CGGAATGTAA GCGCTGATTT TAAATAA
|
|---|
| Protein sequence | MTSLKTITLL TLLTALSAAC RTDKSEFVLA KPESVATLEP INKYDALKTY LNTGDNPNFK
LGAGVGLSDY LAKGVVYRMI NSNFNDITLG YEMKHGAVVK ADGKLDLTNV TNLLKAAQAA
GVSVYGHTLA WHANQNASYL NSLLLTGVDF DPADKRVNYA NGSFEQNQTG WNSWGGSSTR
DIINTGLVGT KSLRFTHTSK ANPWDAQIAL DFSPSPIPVG EYTLSFFVRS DAPGKFRCST
VGSGADVQYQ PDVITTTTWQ YVEWDIKSAG TLSALRYDMG TTPGTYYLDE VRLNPKSTLY
KKPVILQLSA DEKTRIIGGA MDKWISEMVT QTKPYVKAWD VVNEPMDDAK PSTLKTAAGR
AALATDEFYW QDYLGKDYAV RAFKLARQNG NADDILFIND YNLEYDLNKC QGLIDYVRYI
EANGAKVDGI GTQMHMSLDT KRENIDQMFR LLAATGKMIK ISEMDIGIGT GIKTAAATPA
QYKAQAELYE YTIKKYMELV PAKQRYGITM WSPMDSPDGS SWRAGEPIGL WKRDYTRKQA
YGGFANGLAG RNVSADFK
|
|---|
| |