| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Slin_1640 |
|---|
| Symbol | |
|---|
| ID | 8725375 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Spirosoma linguale DSM 74 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013730 |
|---|
| Strand | + |
|---|
| Start bp | 1972109 |
|---|
| End bp | 1973809 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | |
|---|
| Product | SSS sodium solute transporter superfamily |
|---|
| Protein accession | YP_003386486 |
|---|
| Protein GI | 284036556 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.171262 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGTTC TTGACTGGAG TGTACTGGTA TTGGCCTTAG CCGGCATTAT TATTTACGGC
CTTATCCGAA GTCGGGGCAG CCGGAGTATG GACGACTACC TACTGGCGGG ACAGTCGCTT
CCGTGGTACC ATGTGGGCTT GTCGGTGATG GCAACTCAGG CGAGTGCCGT TACGTTTTTA
TCTGCACCGG GACAGGGGTT TTCGGACGGG ATGCGCTTTG TGCAATTTTA CTTTGGGTTA
CCCCTTGCCA TGGTTGTGCT GTCGATTACG TTTGTGCCGA TTTTTCATAA GCTCAAAATT
TACACGGCTT ACGAATACCT CGAATCCCGT TTCGACTCCC GGGTGCGAAC CCTCACCGCC
GGTTTGTTTC TGCTTCAGCG TGGCCTGTCT ACCGGCCTGT CGATTTATGC GCCTGCCATT
ATTCTGTCAA CTATTCTGGG CTGGAATATT TACTGGACGA ATCTGCTCAT GGGCGGCATT
GTGCTCGTAT ATACCGTAAC GGGTGGTACC AAGGCCATTT CGTATACGCA CCTTCAGCAA
ATGGCCGTTG TTACGTTTGC GATGGCGCTG GCCGGGTTTC TGACCGTTAA GATGCTGCCC
GAAGGCGTGG GCTTTGTCGA TGCCCTGCAC GTAGCGGGCG AAGCGGGGCG CATGAACCTG
ATCGACCTGA AGTTTGACCC CAACAGCCGC TACAACCTCT GGTCGGGCCT GATCGGCGGC
TTTTTTCTCC AGCTTTCGTA CTTCGGCACC GACCAGTCGC AGGTGGGACG CTACCTGACG
GGCGAATCCA TTGGCCAAAG CCGTTTGGGT TTGTTGATGA ATGGGTTGTT GAAAGTGCCC
ATGCAGTTTC TGATTCTGCT GGTGGGTGTG CTGGTGTTCG TCTTTTATCA GTACAATCCG
TCGCCCACGT TTTTCAACAA ACAGGAAACC GACCGGCTGA AAGTGAGCCC GTACGCATCG
GCCTACCAAC TCGCCGAGAT CAAGCACCAG AACCTGACGA CCCAACGGCA ACGGGCGGTG
CTCGACATGC AGGCGGCCCT TAAAACGGAT AACGAGGCCG AACAGAATGC GGCAGGGAGT
ATTCTGCGTG AAACGGACGA AGCCCTGAAG CAGGTAAAAT CGGACGTGAC CAAACTAATT
CAGAAGAACA ACCCATCGGC AGATGTCAAC GATGTGAATT ACGTTTTTCT GCGCTTTGTA
CTCGATTACC TGCCCCACGG GCTGATTGGG CTGCTCATTG CGGTGATTTT CAGCGCGTCG
ATGGGGAGCA TTGCTTCGGC TTATAATTCG CTGGCGTCGA CCACGGTGGT TGATATTTAC
AAACGGCTCA TCAAAGACGA CTCAGACGAC GCCCATTACC TGAATGTATC CCGTTGGGCT
ACGGTAGGCT GGGGCGTCTT TTGTATTGTG GTCGCTCAGT TTGCCAACCG GCTGGGAAGT
ATGATTGAGG CCGTCAATAT TTTGGGATCG CTGTTTTACG GCGTGATTCT GGGCGTTTTT
GTGGTTGCCT TTTACGTCAA ATCCATTGGC GGCCGGGCTA CTTTTTGGTC GGCTATCATC
TCCGAAGTCC TCGTTGTGAT CAGTTGGTAT CTGGATTTGA CTGCTTTTCT GTGGTTAAAC
GTAATCGGCT GTTTACTGGT GGTTGGCATC GCCTGGATAC TGCAAAAGGT TATGCCACGT
CCTGTAGGAA CAACCCATTG A
|
|---|
| Protein sequence | MSVLDWSVLV LALAGIIIYG LIRSRGSRSM DDYLLAGQSL PWYHVGLSVM ATQASAVTFL
SAPGQGFSDG MRFVQFYFGL PLAMVVLSIT FVPIFHKLKI YTAYEYLESR FDSRVRTLTA
GLFLLQRGLS TGLSIYAPAI ILSTILGWNI YWTNLLMGGI VLVYTVTGGT KAISYTHLQQ
MAVVTFAMAL AGFLTVKMLP EGVGFVDALH VAGEAGRMNL IDLKFDPNSR YNLWSGLIGG
FFLQLSYFGT DQSQVGRYLT GESIGQSRLG LLMNGLLKVP MQFLILLVGV LVFVFYQYNP
SPTFFNKQET DRLKVSPYAS AYQLAEIKHQ NLTTQRQRAV LDMQAALKTD NEAEQNAAGS
ILRETDEALK QVKSDVTKLI QKNNPSADVN DVNYVFLRFV LDYLPHGLIG LLIAVIFSAS
MGSIASAYNS LASTTVVDIY KRLIKDDSDD AHYLNVSRWA TVGWGVFCIV VAQFANRLGS
MIEAVNILGS LFYGVILGVF VVAFYVKSIG GRATFWSAII SEVLVVISWY LDLTAFLWLN
VIGCLLVVGI AWILQKVMPR PVGTTH
|
|---|
| |