Gene Slin_1220 details

Gene Information

• Locus tag: Slin_1220
• ID: 8724953
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Spirosoma linguale DSM 74
• Kingdom: Bacteria
• Replicon accession: NC_013730
• Strand: +
• Start bp: 1482890
• End bp: 1486303
• Gene Length: 3414 bp
• Protein Length: 1137 aa
• Translation table: 11
• GC content: 53%
• Product: TonB-dependent receptor plug
• Protein accession: YP_003386069
• Protein GI: 284036139

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 33
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGCCTCTTC TACGTCTACC TAAAATCAGT CTGGTCCTGT TGGGGTTGCT GTGTCAGCAA 
CTGGCTACGG CCCAGGCTAT TGTCTTCGCC CGCCAACAGC GGAAAGCGAA TAACCTGGCG 
CAAATCGCTC CGGTCGAGAG CCAGAAACTT AAAGAAGTGC TGACGGATAT GAGCCGCCAG 
TTTCAGGTTA GTATTCTATT TGAGGAAGCA ACCGTTAAGG GAATCACCGT GCCGGTCGAT 
GCTCGTCCGG GCACTGGAAA GCTGGAAAAG CAACTTCAGT CCCTGCTAAA ACCGTATGGG 
CTGATGGCCC AGAAGAAGGG TGAACAGGCG TATTATGTCA TCAAAATCCC GGCTAAGGAG 
AGCGCGACCT CGGTCAGAAT GATCCAATCC GAAAACGGAA TGGTGCCCGC TATTGAGAAT 
AGCGTATCGG CGCTTCAGCC GTTGGCACCC ACATTGACCG AAAAAGTAAC GGCCGACATT 
CGGGTCACCG GCCGCGTAAC CAGCGAAAAA GGTGAAGGGT TACCCGGCGT TAACGTCGTC 
ATTAAAGGGG CCATCCGGGG TACGAACACT GACGCCGACG GACGCTATCA ACTAAATGTG 
CCCGATGCGA ACACAACGCT GGTATTCAGC TTTGTTGGCT ACGCTACGCA GGAAGCGCTG 
GTAGGTAACC GGACAACGCT GAACATTCAG CTACAGCCCG ATAACAAATC GCTTAACGAA 
GTGGTGGTAG TGGGCTACGG TACGCAGTCG CGGAAAAACC TGACCAGTGC AGTGAGCACC 
ATTAAGCCCG ACGAACTGAA CCGGGGGGCT ATCAGCGACG TAGGCCAGTT GTTGCAGGGT 
AAAGTGCCGG GCCTGAACAT CTCGGCCAAT GGTGACCCAA ACGCACCAGC CGCCGTAATT 
CTGCGGGGAG CGTCTACGAT TAACAGTTCG CAGGGACCAT TTTATGTGAT TGACGGGGTG 
CCGGGCGCTG ATATTTCCAT TATTGCCCCC GACGATATTG CGTCGATTGA TGTGCTGAAA 
GATGCCGCTG CTACGGCTAT TTACGGTAAC CGGGCTGCCA ACGGTGTTAT CATGGTAACG 
ACGAAGCGCG GTAAAAAAGG CCAGATGCAG ATTACCTATA GTGGCTATGC CGGTATTGAA 
AAAGTATCGA GCAAGCTCAA TATGATGAAT GCCAGCCAGC TTCGCGACTT CCTGACGAAG 
AACGGGCAGT CGTTCTCGCC AAACGATGAT AAAGGAGTGG ATACCGACTG GCAAGCCGCC 
GTTCAGCGCA GCACGGCCAT TTCGCATAAC CACAATATCT CGATCAGCGG GGGCACTGAA 
CATAGCACCT ACAGTGCCAG TATCAACTAC CTCGATAAGC AGGGGATTTT GCAGAGTAGC 
TCGCTGAATC GGGTTATTGC CCGTCTGGCT GTTGAGCAAA TGGCCTTTAA CGACAAACTG 
AAGTTGGGAC TGAACGTGAC CAACTCCAGT AGCAATGCCA ACAACACGCC CCTGCGCAAC 
AACGTCCTGA ACCAGATGGT GAATCACCTG CCGGTTTCGC CCGTAACCAA TCCAGACGGT 
ACCTACTTCG AGAACTTCCA GAACACCGGC TACTTCAACC CGGTGGCGAT GATCAATTAT 
GCCAAGGACA ATACAAAGTA TAACAACCTG GTTGGTTCTC TGTTTGCCCA GGTGAAACTG 
CCGTTTGGTC TTTCGTACGA TCTTAACCTG TCGTACCAGA GCAATACGTC GCTGCATGGT 
GAGTCGTACG CCAGCTATTA CACGCAGTAC AACAGCGCCA ACTTCTATAA CTACCCCGAT 
CCGCCACTCG TACACAGCCT GCTCAACTTC GGTACCAACG GGTCGGCGCT GCGGAATACT 
TACCAGACCA CACGTAAGGT GCTGGAAACC TTTTTTACCT GGAACAAGGA ATTTGGCGAC 
CACTCTGTGA ATGCCGTTCT GGGCTATTCG TGGCAGGGTA ATGTTTCGGG CGATGGTTTC 
CAGACGTCGA CAACCAACTT CCCCGTCGAT AACATTGGCT ACAACAACTT CGCGCTGAGT 
AACCCCTATG CAGTTTCGTC GTACCGGATC AACTTTGGCC CTGACGGTAT CTACCAGGAA 
ACGCGGCTGA TTTCTGATTT TGCCCGGTTG AACTATAATT ACAAAAATAA ATACCTGCTG 
CAGGGCTCGA TCCGACGCGA CGGTAGCTCG GTGTTTGGTA AAAACAACCA ATGGGGATAT 
TTCCCGGCAG CGGGTGTCGC GTGGCGCATC GACCAGGAGA AGTTTATGCA AAACCAGAAC 
CTGTTCAGCG ACCTGAAATT CCGGGCCAGC TACGGAGTAA CGGGTAACTC GTCGGGCTTC 
AATGCCTACA CGGCGCAGTT TATCTCGGGT AGCCTGGGTA CATATTATTA CAACGGTATC 
CAGACGGCCG CTTATGGCCC TACGCAAGCC GCTAACCCCG ATCTGCACTG GGAAAAAACG 
GCAACGGCTA ACATCGGCCT TGATTTTACC ATCCTGAAAG GCAAGTTGAG CGGTACCGTT 
GAGTGGTATA ATAAAGAAAC CACCGGTATG ATCTATGCCT ACCGGGTCAA TCCGGTGCTT 
GTACCGGCCG GTAGCATCAT TGCCAACGGT GGCAGCATGA GCAACAAAGG TGTTGAGGTT 
AGCCTGAACG CGACACCGGT GCAAGCGGGT AAATTCAGCT GGACAACGGG CTTGAACCTG 
GCGCACAACA GCAACCGGAT CAATAGCTTA ACGAATCCGC TGTTTGTAGG TGGCGACTCT 
GTCAGGACCA CGCAGCCCGA AGGGGCCGGA CAAACGGGCA GCACCCTGCA AATCCTGAAA 
GCGGGTATGC CGCTAGGACA GTTCTTCTCG CTTGAGTATG CCGGTAAGAA CGACAAAGGA 
GTGTCGCAGT ACGTGAGTCG AAACGGTTCC CTCACCACGA CACCGGTTAT TGGTACGGAC 
TACAAATACC TGGGTAGTCC ACAACCCAAA CTGCTGGTTG GCTGGACTAA CACCCTACGC 
TACGGAAACG TTGATCTGAA CGTCTTTTTC CGCGGAGTCT TCGGCAACAA AATCTTCAAT 
GCCACCCGCG CCGATTTGTT CCGGCCAAGT ACAGCCCAGT TTACGAATAT TCTGGTCGAT 
GCCGCCGATG AAAAAGCAAC CGACGTTAAC TCGTTCAAAT ACTCAAGCCG CTACATAGAA 
GATGGCAGCT ACGTTCGACT CGACAACGCC ACGCTGGGCT ACACCCTCAA AAATCTGGGT 
CAGTACATCC GCAACGTGCG TATTTATACA TCGGTCAACA ATGCGTTCGT GATCACCGGT 
TACAAAGGAA TTGACCCCGA AATCAATCAG GGCGGCCTGG CTCCGGGTAT CGAAGCCTAC 
AATTTTTATC CAAAGACCCG CACATTCCTC CTGGGTGTAA ACGTGTCATT TTAA 

 

Protein sequence

MPLLRLPKIS LVLLGLLCQQ LATAQAIVFA RQQRKANNLA QIAPVESQKL KEVLTDMSRQ 
FQVSILFEEA TVKGITVPVD ARPGTGKLEK QLQSLLKPYG LMAQKKGEQA YYVIKIPAKE 
SATSVRMIQS ENGMVPAIEN SVSALQPLAP TLTEKVTADI RVTGRVTSEK GEGLPGVNVV 
IKGAIRGTNT DADGRYQLNV PDANTTLVFS FVGYATQEAL VGNRTTLNIQ LQPDNKSLNE 
VVVVGYGTQS RKNLTSAVST IKPDELNRGA ISDVGQLLQG KVPGLNISAN GDPNAPAAVI 
LRGASTINSS QGPFYVIDGV PGADISIIAP DDIASIDVLK DAAATAIYGN RAANGVIMVT 
TKRGKKGQMQ ITYSGYAGIE KVSSKLNMMN ASQLRDFLTK NGQSFSPNDD KGVDTDWQAA 
VQRSTAISHN HNISISGGTE HSTYSASINY LDKQGILQSS SLNRVIARLA VEQMAFNDKL 
KLGLNVTNSS SNANNTPLRN NVLNQMVNHL PVSPVTNPDG TYFENFQNTG YFNPVAMINY 
AKDNTKYNNL VGSLFAQVKL PFGLSYDLNL SYQSNTSLHG ESYASYYTQY NSANFYNYPD 
PPLVHSLLNF GTNGSALRNT YQTTRKVLET FFTWNKEFGD HSVNAVLGYS WQGNVSGDGF 
QTSTTNFPVD NIGYNNFALS NPYAVSSYRI NFGPDGIYQE TRLISDFARL NYNYKNKYLL 
QGSIRRDGSS VFGKNNQWGY FPAAGVAWRI DQEKFMQNQN LFSDLKFRAS YGVTGNSSGF 
NAYTAQFISG SLGTYYYNGI QTAAYGPTQA ANPDLHWEKT ATANIGLDFT ILKGKLSGTV 
EWYNKETTGM IYAYRVNPVL VPAGSIIANG GSMSNKGVEV SLNATPVQAG KFSWTTGLNL 
AHNSNRINSL TNPLFVGGDS VRTTQPEGAG QTGSTLQILK AGMPLGQFFS LEYAGKNDKG 
VSQYVSRNGS LTTTPVIGTD YKYLGSPQPK LLVGWTNTLR YGNVDLNVFF RGVFGNKIFN 
ATRADLFRPS TAQFTNILVD AADEKATDVN SFKYSSRYIE DGSYVRLDNA TLGYTLKNLG 
QYIRNVRIYT SVNNAFVITG YKGIDPEINQ GGLAPGIEAY NFYPKTRTFL LGVNVSF