| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_21580 |
|---|
| Symbol | |
|---|
| ID | 8633793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2404542 |
|---|
| End bp | 2406464 |
|---|
| Gene Length | 1923 bp |
|---|
| Protein Length | 640 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 75% |
|---|
| IMG OID | |
|---|
| Product | ABC-type antimicrobial peptide transport system, permease component |
|---|
| Protein accession | YP_003314912 |
|---|
| Protein GI | 269795457 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.983976 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCCA TGTGGTCCTT CGCCCGCTCT GCGCTGCGCG CGCACCGCTC GAGCATCGTC
GGGAGCTTCC TCATGGTCGC CCTCGCCTCC GCGCTCCTCA CCGCGACCGC CGCCTGGATG
GAGGCCGGTC TGCGAGGCAC CGCGTCGGGG GAGTCCCTGC CCATGCTGTC CGCCGTGACC
GGGTCCTTCG CCGGGACCAC CATCCTTGTC GTCGTGCTCG TCGTCGCCTC CGCCTACGCG
GCTGCCCTGC GCGAGCGTCG TGCGCAGTTC GCGCTGCTGC GCGCCGTCGG TGCGACACCT
CGGCAGGTTC GCTCGATGAT CGCGGCGGAG GTCTCGATCG TCTTCACCGC CGCGACCGCC
GCCGGAGCCG TCCCCGGTCT GCTCCTCGCC CGGGCCGCGA CACCGTTGCT CACCTCCGAC
GAGATCGTCC CCGTCGGCTT CGAGCTCCCG CTGTCCCCGT GGCCCGTCCT GGCGACCGTC
CTGCTGCTCG GGGCAACCGG CGCCGTGACC GCCCGTGTCG CGGCCCGGGA GACCGCCCGG
CTCAGCCCGA CCGCGGCCGT CCGGAGCAGC GCCGTCGAGC CCTCGGTCCT GAGCCCGGGC
CGCCGCATCG CCGCGTGGTC CACCCTCGGA CTCGGTCTCG GCGTCGCCGG CGTGCCCTTC
GTGGTCCCCG GGATCATCGG CAGCGCGACC GGCGCGTCGT CCGCGTTCCT GCTCATCACC
TCCGCCGCGC TCGCCGGACC GGCGGTCGTG GCCACCCTGG CCCGCCACGG GCTGGTGCTC
GCCCGGGGGA CCGGGAGCTC GAGCCTCACC CTCGCGCTGG CCAACGCCCG CGGCTTCTCA
CGACGGCTCA CCGCCGCGAT CATCCCGCTC GCGCTGCTCC TGGCGCTCGG CACCGTCCAG
ACCGGCACCA ACCGCGCGGT CCTCGCCGCG ACCGGCCTCC AGCTCGAAGA GGGCATCACC
GCGGACCTCG TCGTGCGGCC TGGGTCGGAA GAGTCAGGCC TCAGCGCGCA GGACGTCGCC
ACGGTCACCG CGCTGCCCGG CGTCGACGGC ACGACGACCC TGCGCGCGCA GGACGCCGAG
GTGCGCACCG ACGAGGAGAT GGACGGCGTC CCCGGCCTCG GCGCGTTGGC CTGGGAACCG
ACGGCGCTGC AGGTGCTGTC CGGCGACGGG CTGCTCGTCG ACCCCGACGT GCGGTCCGGT
GACCTCGCCG ACCTCATGAC ACCGGGCACC GTGGCCGTCG GCCGCGACTC CCTGCTCGGG
TCGGGGACCG GGCTCGGGGG AGAGGTCACC GTCCGCGTCG ACGGTCAGGA GTCGGCGCTG
ACGATCGTCG CCGTCTACGA CAGGTCGCTC GGGTTCGGCG ACTACCTCGT CGGCGAGGAC
AACCTGCCGG CGGGCAGCAC GGCGGACGCA CTGCTCGTCC AGACTGCCGG AGGCGACGGG
CCGGGTGCCG AGTCGGTGCG CTCAGCCGTG CAGCACCTCG GTCTGCGGGC CGACGACCCC
GCCGCCTACG CCGATGCGGC CGTCGACGCC GCGGCCGGCC AGCAGCGCCT CTCCGCCGTC
CTGCTGGCCG CGCTCCTCGT CTTCGTGGCC GCCGCCGCGG CCAACACCCT CGCGATGCTC
GCCGGGTCGA GGCGCCCCGA GCACGCCCTC CTGCGCCGCA CCGGCGCGAC CCGGCGCCAG
GTCCTGACGA CCTCCGTGGT CGAGGCGACC GCCGTCGCGG TGGCCGCCCT CGTCATCGGG
ACGCTCTCCG TGCTCCCCGC GCTGGTGGGC GTCGGGTACG GGCTCGTGGG GTCGGTGACG
GCAGGCTTCG ACCTGCCGGT CTTCGCAGCG CTGGCTCTCG CCGTCGTCGC GGTCGCCGGC
TCGACGACGG TCGTCGGGGC TGTGCGGGCG ACTGCGACGC GGCCCGTCGT TCCCGTCGGG
TGA
|
|---|
| Protein sequence | MSAMWSFARS ALRAHRSSIV GSFLMVALAS ALLTATAAWM EAGLRGTASG ESLPMLSAVT
GSFAGTTILV VVLVVASAYA AALRERRAQF ALLRAVGATP RQVRSMIAAE VSIVFTAATA
AGAVPGLLLA RAATPLLTSD EIVPVGFELP LSPWPVLATV LLLGATGAVT ARVAARETAR
LSPTAAVRSS AVEPSVLSPG RRIAAWSTLG LGLGVAGVPF VVPGIIGSAT GASSAFLLIT
SAALAGPAVV ATLARHGLVL ARGTGSSSLT LALANARGFS RRLTAAIIPL ALLLALGTVQ
TGTNRAVLAA TGLQLEEGIT ADLVVRPGSE ESGLSAQDVA TVTALPGVDG TTTLRAQDAE
VRTDEEMDGV PGLGALAWEP TALQVLSGDG LLVDPDVRSG DLADLMTPGT VAVGRDSLLG
SGTGLGGEVT VRVDGQESAL TIVAVYDRSL GFGDYLVGED NLPAGSTADA LLVQTAGGDG
PGAESVRSAV QHLGLRADDP AAYADAAVDA AAGQQRLSAV LLAALLVFVA AAAANTLAML
AGSRRPEHAL LRRTGATRRQ VLTTSVVEAT AVAVAALVIG TLSVLPALVG VGYGLVGSVT
AGFDLPVFAA LALAVVAVAG STTVVGAVRA TATRPVVPVG
|
|---|
| |