| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_20810 |
|---|
| Symbol | |
|---|
| ID | 8633716 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 2322162 |
|---|
| End bp | 2323982 |
|---|
| Gene Length | 1821 bp |
|---|
| Protein Length | 606 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | |
|---|
| Product | ABC-type multidrug transport system, ATPase and permease component |
|---|
| Protein accession | YP_003314837 |
|---|
| Protein GI | 269795382 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.391072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCTCGC ACGCCCTCAC GGGTTCACGT TCGCGCCGTT CTGCCGTCCT CATCGGCCGA
GGACTGCGGA CGGAACCTGC TGTCTACTTC TGGGCCATCG GTGCCTCCGC CGTCTTCGGC
GGTCTCACCG TGGCCGTCAG CCAGGTCCTC GGCTGGGTCA CCGACGAGAT GGTCGTACCG
GCCCTCGACG GCTCGAGCGC CGCCGGACGC GCCTGGATCG GCGGGCTGCT CCTGGCGGCC
GTCGGCCTCG GCCTCGCCCT CAGCGTCGCC GCGCGACGCA TCTTCGCGGG CGTCGGGCTG
TCAAACCTGC AGGCCCACCA CCGGCGTGCC GTGACCCGCC GGTACCTCGA GCTGCCCATG
TCGTGGCACC GCGCGCACCC GACCGGTCAG CTGCTGTCCA ACGTCAGCTC GGACGTCGAG
GCCGCCACCG GCGTGTTCAC CCCGCTGCCC TTCGCGCTCG GCGTGTGCGT GATGATCCTC
ATCGCCGCGG TCGCCCTCCT GAGCCTCGAC GTCTGGCTCG CCGTGGCGGC GCTCGTCGTG
CTCCCGCTCG CCGTGCTGGT CAACCTCGTG TTCCAGAAGT ACATGTCCCC GGCGATCACC
CGGGCGCAGC AGCTGCGCGC CGAGGTCGCC GACGTCGCCC ACGAGAGCTT CGAGGCCGCC
CTGCTCGTCA AGGCCCTCGG CACCGAGGAC CGCGAGGAGG CACGCTTCGC CGAGAAGGCC
GCAGCGCTGC GGGCCGCCAA CATCCGCGTC GGGAAGGTCC GTGCGGCCTT CGACCCGATC
ATCGAGTTCC TGCCCTCGGT CGGCACGCTC CTCGTCCTGC TCGTGGGCAC CTCCCGGGTG
TCGGGCGGCT ACGTCGAGAC CGGTCAGGTG GTCTCCGCTG CCTACCTGCT GACGATGATG
TCGGTCCCGG TCCGCGCCTT CGGCTGGGTC CTGGGCGAGA TCCCGCGCGG CCTCGTCGGC
CACGACCGCA TCGCGCAGGT GCTCGACGCC CCGGGCGCGC TCTCGGTCGG GACCCGCACA
CGACCCCCGC GGTCGGGCGA CGGCTCCGCA GGGCTGCAGG TGCGGCTCGA GGGTGTCGGC
GTGCGGGTGC ACGGCGCCGC CGGCGGCGTG CAGATCCTCG AGGGTGTCGA CCTCGAGGTC
GAGCCGGGGG AGACCCTCGC GGTCGTCGGC CCGACCGGTG CGGGCAAGAC GACGCTGGTC
TCGCTGCTCA GCAGGCTCTC CGACCCGACG AGCGGCCACG TGCTGCTCGA CGGTGTCGAC
GCCCGCGAGC TGACCGCCGA GGCCGTCACC GGCGCGGTGG CCTTCGTCTC GCAGTCGACC
TTCATCTTCG AGGACACGAT CCGCGGGAAC ATCACGCTCG CCGACGTCGG CGACCAGGGC
TCGTTCACCG ACGACGAGGT CTGGGCTGCG CTCGAGCTCG CCCGGGTCGC GGACGTGGTC
CGCGCCCTGC CGGGCGGCCT GGACTCCCCG CTCGGCGAGC GCGGGGCCAA CCTCTCGGGC
GGGCAGCGCC AGCGCGTGGC CATCGCGCGC GCACTGGTGC GCCAGCCGAG CCTGCTGGTC
CTCGACGACG CCACCTCGGC GGTCGACCCC GAGGTCGAGC GCGCCATCCT CGCCGGCCTG
CGCGCCGGGT CGGGGACCAC CGTGGTCATG GTCGCCTACC GCATGTCGAG CGTCGCGCTC
GCCGACCGCG TGGTGCACCT CGAGTCCGGC CGCGTGGTCG ACGTCGGGAC CGCGGCCGAG
CTGCTCGAGC GCGACGCAGG ATTCCAGGAC CTCGCCCTCG CCTACCAGCG TGAGGCCACC
CGACGAGAGG ACGAGGCGTG A
|
|---|
| Protein sequence | MTSHALTGSR SRRSAVLIGR GLRTEPAVYF WAIGASAVFG GLTVAVSQVL GWVTDEMVVP
ALDGSSAAGR AWIGGLLLAA VGLGLALSVA ARRIFAGVGL SNLQAHHRRA VTRRYLELPM
SWHRAHPTGQ LLSNVSSDVE AATGVFTPLP FALGVCVMIL IAAVALLSLD VWLAVAALVV
LPLAVLVNLV FQKYMSPAIT RAQQLRAEVA DVAHESFEAA LLVKALGTED REEARFAEKA
AALRAANIRV GKVRAAFDPI IEFLPSVGTL LVLLVGTSRV SGGYVETGQV VSAAYLLTMM
SVPVRAFGWV LGEIPRGLVG HDRIAQVLDA PGALSVGTRT RPPRSGDGSA GLQVRLEGVG
VRVHGAAGGV QILEGVDLEV EPGETLAVVG PTGAGKTTLV SLLSRLSDPT SGHVLLDGVD
ARELTAEAVT GAVAFVSQST FIFEDTIRGN ITLADVGDQG SFTDDEVWAA LELARVADVV
RALPGGLDSP LGERGANLSG GQRQRVAIAR ALVRQPSLLV LDDATSAVDP EVERAILAGL
RAGSGTTVVM VAYRMSSVAL ADRVVHLESG RVVDVGTAAE LLERDAGFQD LALAYQREAT
RREDEA
|
|---|
| |