| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_05930 |
|---|
| Symbol | |
|---|
| ID | 8632230 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | + |
|---|
| Start bp | 672666 |
|---|
| End bp | 673643 |
|---|
| Gene Length | 978 bp |
|---|
| Protein Length | 325 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | |
|---|
| Product | ABC-type dipeptide/oligopeptide/nickel transport system, permease component |
|---|
| Protein accession | YP_003313387 |
|---|
| Protein GI | 269793932 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.146174 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCGGT ACGTGGCGGT CCGCCTCGTG ACCCTCGTCG TGTCGCTCGT GCTCGCGGCC
GTCGTGGTGT TCGTCGTGCT GCGCCTCCTC CCGGGGGACA GCGCGGGCAC GACGCTGGGT
GTGGGGACGA CGACGGACCA GCTGGACCAG CTGCGCAGCG AGCTGGGCAC CGACCGGTCG
GCGCTGACGC AGCTGGGCCA GTGGGCCGGG GCTCTCCTGT CGGGCGACCT CGGCACGTCC
TTCGTGTCGA GGCTGCCGGT CGGCGAGCTC ATCAGCAGCA AGCTCCCCAT CACGGTGCCG
CTGAGCCTGG CGGCCTTCGT GCTGTCGGTG CTCGTGTCGG TGCCGCTCGG CGTGATCGCC
GCGGTCAGGC GCCGCGGCGT GATCGGCGTC GCGGTGTCGG CGGTCTCCCA GCTGGGGGTC
GCGGTCCCGG TGTTCTGGGT GGGCGTGCTG CTCGTGTGGG TCTTCGCGCT GCGCCTCGGG
GTGCTGCCGC CGGGCGGGTT CCCACGGCAG GGCTGGGACG ACCCGGCCGC CGCGGTCCGG
TCGCTCGTGC TGCCCGTGGT CACGGTGTCG ATCGCGATGT CGTCGGTGAT GGTCCGGTAC
GTGCGGTCGG CGACGCTCGA CGTCCTCGAC CAGGACTACA TCAGGACGGC ACGGTCGCTC
GGCTATGGCC GGTGGCAGGC GCTCGCGCGG CACGGTCTGC GCAACGGCGC GGTTCCGGTG
GTCGCGATCC TCGGCATCGA GCTCGCGACG TCGCTGCTCG GCGCGGTGGT CATCGAGAAC
GTGTTCGCCC TGCCGGGCCT GGGCACGCTG CTGCTCGACT CGGTCAACGG CCGGGACCTC
CCCGTGGTCC AGGCGCTCGT CCTGGCGATC ACGGCGGTGG TGCTCGTCGT CAACTTCTTC
GTCGACCTGC TGCAGCGGGC CATCGACCCG CGCCTGCGGC ACGGGTCGAC GCTCGGCACG
TCAGGAGGCT CGCGATGA
|
|---|
| Protein sequence | MLRYVAVRLV TLVVSLVLAA VVVFVVLRLL PGDSAGTTLG VGTTTDQLDQ LRSELGTDRS
ALTQLGQWAG ALLSGDLGTS FVSRLPVGEL ISSKLPITVP LSLAAFVLSV LVSVPLGVIA
AVRRRGVIGV AVSAVSQLGV AVPVFWVGVL LVWVFALRLG VLPPGGFPRQ GWDDPAAAVR
SLVLPVVTVS IAMSSVMVRY VRSATLDVLD QDYIRTARSL GYGRWQALAR HGLRNGAVPV
VAILGIELAT SLLGAVVIEN VFALPGLGTL LLDSVNGRDL PVVQALVLAI TAVVLVVNFF
VDLLQRAIDP RLRHGSTLGT SGGSR
|
|---|
| |