| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sked_04360 |
|---|
| Symbol | |
|---|
| ID | 8632073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sanguibacter keddieii DSM 10542 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013521 |
|---|
| Strand | - |
|---|
| Start bp | 490838 |
|---|
| End bp | 492694 |
|---|
| Gene Length | 1857 bp |
|---|
| Protein Length | 618 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | |
|---|
| Product | beta-glucosidase-like glycosyl hydrolase |
|---|
| Protein accession | YP_003313236 |
|---|
| Protein GI | 269793781 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 0.117639 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCCACTC CCCTGACCAC CCTGACCGCC CCCGACGGGA CCGTCTTCCG CGATCTCGAC
AAGGACGGCG TCATGGCGCC GTTCGAGGAC CCCCGCGAGA GCGTCGAGAC CCGCGTCGAG
GACCTGCTCG GACGCATGAA CCTCGAGGAG AAGGCGGGTC TGATGTTCCA GACCGTCATC
GAGACGAGCC CCGACGGGAC CCTTGTCGAG CAGACCGGCG CGATCAGCAA GTCCCCGACC
ACCGTCGTGG TCCAGGAGAA GCTGCTCAAC CACTTCAACG TGCACGTGCT GCCCGAGGGC
CGCCTCGCCG CCCGCTGGCA CAACAACCTG CAGGCCGTCG CCGAGCAGAC CCGCCTGGGC
ATCCCCGTGA CCGTCTCGAC CGACCCGCGG CACGCCTTCC ACGAGAACAC CGGGGCGTCC
TTCGCGGCCG GGCACTTCTC GCAGTGGCCC GACTCCCTCG GCCTCGCCGC GATCGGCGAC
ACCGAGCTGG TCCGCCAGTT CGCCGACGCC GCCCGCCAGG AGTACCTGTC CGTGGGCATC
CGCGCGGCGC TGCACCCCTG CGTCGACCTC GCGACCGAGC CCCGCTGGGC CCGCCAGCTC
AACACCTTCG GTGAGACGTC CCAGCTGGTC AGCGACTTCA CCGCCGCCTA CCTCGACGGG
CTCCAGGGCC CCGGCGGCGC GCTGAGCGCC GAGTCGGTCG CCTGCACCAC CAAGCACTTC
CCCGGCGGCG GCCCGCAGAA GGACGGCGAG GACGCGCACT TCCCCTACGG CCGCGAGCAG
GTCTACACCG GAGGGACCTT CGAGGAGCAC CTCGCGCCCT TCAAGGTCGC CCTCGAGCAC
AAGACCGCCG CGATGATGCC GTACTACGGC ATGCCCGTGG ACCTCGAGAT CGACGGGGAG
AAGATCGAGG AGGTCGGCTT CGGCTACAAC AAGCAGATCG TCACCGGGCT GCTCCGCGAG
CAGATGGGCT TCGACGGCGT GGTCGTCACC GACTGGGAGC TCGTCAACGA CAACAAGGTC
GCGACCGGAC AGGTGCTGCC CGCCCGCGCG TGGGGCGTCG AGCACCTCGA CGCACCGGGG
CGCATGGAGA AGATCATCCA CGCCGGCTGC GACCAGTTCG GCGGCGAGGA GTGCCCCGAC
CTGCTCGTCC AGCTCGTCCG CGAGGGACGC GTCACCGAGG ACCGCATCGA CGCCTCCGTG
CGCCGCCTGC TCCGCGTGAA GTTCGAGCTC GGGCTCTTCG ACGACCCCTA TGTCGACGAG
GACGCGGCCG ACGAGATCGT CGGGCGCGCC GACCTCGTCG CCGCGGGCCT CGCCGCGCAG
AGCCGCTCGG TCACCGTGCT GAAGAACGGC GACGTCGACG GCAGCCCCGT CCTGCCGCTC
ACCGGCAGCC AGCGCGTGTA CGTCGTCGGC ATGTCCGACG AGGACGCCGC CCGCCTCGGG
ACCGTCGTGA CCGACCCGGC CGACGCCGAC GTCGCCGTCG TGCGCCTCCC CGCCCCGTGG
GAGCACCGCG ACTCGATGTT CCTCGAGGCC TGGTTCCACC AGGGGTCGCT CGACTTCTCC
GCCGAGACCG TCGCGCAGGT CACCGAGCTC GCCGCGCAGG TGCCCGTCGT CCTCGACGTC
ATGCTCGACC GCCCCGCGAT CCTCACGCCG CTCGTCGACG TCGCGACCGC GATCGTCGGC
ACCTACGGGA CGTCCGACCC GGCGCTCGTC GCCGCGCTGA CCGGCGAGGT CAAGCCTGAG
GGGCGCCTGC CGTTCCAGCT GCCCCGTTCG ATGGAGGCTG TCGCGGCGTC ACGCCCGGAT
GTCGCGTCCG ACACGACCGA CCCGGTGTTC CCGGTGGGGC ACGGGCTGAG CATCTGA
|
|---|
| Protein sequence | MPTPLTTLTA PDGTVFRDLD KDGVMAPFED PRESVETRVE DLLGRMNLEE KAGLMFQTVI
ETSPDGTLVE QTGAISKSPT TVVVQEKLLN HFNVHVLPEG RLAARWHNNL QAVAEQTRLG
IPVTVSTDPR HAFHENTGAS FAAGHFSQWP DSLGLAAIGD TELVRQFADA ARQEYLSVGI
RAALHPCVDL ATEPRWARQL NTFGETSQLV SDFTAAYLDG LQGPGGALSA ESVACTTKHF
PGGGPQKDGE DAHFPYGREQ VYTGGTFEEH LAPFKVALEH KTAAMMPYYG MPVDLEIDGE
KIEEVGFGYN KQIVTGLLRE QMGFDGVVVT DWELVNDNKV ATGQVLPARA WGVEHLDAPG
RMEKIIHAGC DQFGGEECPD LLVQLVREGR VTEDRIDASV RRLLRVKFEL GLFDDPYVDE
DAADEIVGRA DLVAAGLAAQ SRSVTVLKNG DVDGSPVLPL TGSQRVYVVG MSDEDAARLG
TVVTDPADAD VAVVRLPAPW EHRDSMFLEA WFHQGSLDFS AETVAQVTEL AAQVPVVLDV
MLDRPAILTP LVDVATAIVG TYGTSDPALV AALTGEVKPE GRLPFQLPRS MEAVAASRPD
VASDTTDPVF PVGHGLSI
|
|---|
| |