| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3513 |
|---|
| Symbol | |
|---|
| ID | 4256259 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 4159886 |
|---|
| End bp | 4163098 |
|---|
| Gene Length | 3213 bp |
|---|
| Protein Length | 1070 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 638124197 |
|---|
| Product | CzcA family heavy metal efflux protein |
|---|
| Protein accession | YP_739550 |
|---|
| Protein GI | 114049000 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGCAAA AAGCAATCGA AGCCGCGATT AAAAATCGGC TATTAGTGGT ACTGGCACTG
CTCGCTGTGG TCGCCGCCAG TGTCGCCATG TTGCCCAAAC TGAATCTGGA TGCTTTTCCT
GATGTGACCA ATGTGCAGGT GACTATCAAC ACCGCGGCCG AGGGCTTGGC CGCCGAAGAG
GTGGAAAAAC TTATCAGTTA TCCGGTCGAG TCGGCCATGT ATGCCTTACC GGCGGTGACC
GAGGTACGCT CACTATCCCG TACAGGCTTG TCTATCGTGA CTGTGGTATT TGCCGAGGGC
ACGGATATTT ACTTTGCCCG TCAGCAAGTG TTTGAGCAGT TACAGGCGGC GCGGGAGATG
ATCCCAAGCG GGGTGGGCGT GCCAGAAATT GGCCCTAACA CTTCAGGTTT GGGGCAGATT
TATCAGTACA TTCTGCGGGC TGACCCTAGC TCTGGCATTA ATGCCGCCGA GCTGCGAAGC
CTTAACGATT ACCTCGTTAA ACTGATCATG ATGCCGGTGG GCGGCGTGAC CGATGTTTTA
TCCTTTGGCG GCGAGGTGCG TCAGTATCAA GTGCAGGTCG ACCCTAACAA GTTGCGAGCC
TATGGCTTGT CGATGGCGCA GGTGAGTGAG GCGCTTGAGA GCAATAACCG CAACGCTGGT
GGTTGGTTTA TGGACCAAGG CCAGGAGCAA TTGGTGGTGC GGGGTTATGG CATGTTACCC
GCGGGTGAAG CGGGGCTTGC TGCTATCGCT CAAATTCCGC TGACTGAAGT GCGTGGCACG
CCTGTGCGAG TGGGCGACAT TGCTAAGGTC GATTTTGGCA GTGAGATCCG CGTAGGGGCC
GTGACTATGA CGCGCCGCGA TGAGGCGGGT CAGGCGCAAG CCTTGGGCGA AGTGGTGGCG
GGCGTGGTGC TTAAGCGCAT GGGCGCCAAC ACTAAGGCGA CGATTGATGA TATCGATGCG
CGGATTAATC TGATTGAGCA GGCGCTGCCC AAGGGCGTGT CCTTCGAGGT GTTTTACGAC
CAAGCGGACT TAGTGGATAA AGCCGTTACC ACAGTGCGCG ATGCGCTGCT GATGGCCTTT
GTGTTTATCG TGGTGATCTT GGCGCTGTTC CTTGTGAATA TTCGCGCCAC CCTGTTGGTG
CTGCTGTCTA TCCCTGTGTC CATTGGTTTG GCGCTAATGG TGATGTCTTA CTATGGCCTT
TCTGCCAACT TGATGTCTCT TGGTGGGTTA GCGGTGGCCA TTGGTATGTT GGTCGATGGT
TCTGTGGTGA TGGTTGAGAA TATTTTCAAA CATTTAACTC AGCCAGACCG CCGTCACTTA
GCTCAGGCGA GAAGCCGCGT GGATGGCGAA GTCGACCCAT ACCATGGCGA TGAAGATGGC
AGTGTTCGCG CCGTTGAAGC GGATAACAGC ATGGCCGTGC GCATCATGCT GGCGGCGAAA
GAGGTGTGCA GTCCGATCTT CTTCGCGACC GCCATCATCA TTGTGGTGTT TGCGCCGCTA
TTTGCGCTGG AAGGGGTTGA GGGCAAACTG TTCCAACCTA TGGCGGTCAG CATTATTTTG
GCGATGATTT CCGCCTTGCT GGTGGCCTTG ATTGCCGTGC CTGCACTGGC GGTTTATCTG
TTTAAGCGTG GCGTCGTGCT GAAGGAGAGC GTCGTGTTAG CACCTTTGGA CTCTGCCTAT
CGCAAGCTGC TGAGTGCAAC CCTTGCTAGA CCAAAGTTGG TGATGATCAG TGCGCTGCTG
ATGTTTGCCA TGAGTATGGT TTTGCTGCCA AGGTTGGGGA CCGAGTTTGT GCCCGAGCTA
GAGGAAGGCA CGATTAACCT TAGGGTGACG CTGGCACCGA CCGCGAGCCT TGGCACTTCT
TTAGATGTGG CGCCAAAGCT TGAGGCCATG TTGCTGGAAT TCCCCGAGGT GGAATATGCC
TTGAGCCGTA TCGGTGCGCC CGAATTAGGC GGCGATCCTG AGCCTGTCAG CAATATCGAA
GTCTATATCG GCCTTAAACC CATCGAAGAA TGGCAATCGG CTAGCTCGCG TTTGGAGCTG
CAACGGCTGA TGGAGGAAAA GCTCAGTGTT TTCCCCGGAC TGCTACTCAC CTTCTCACAA
CCGATTGCGA CGCGGGTCGA TGAGTTGCTC TCTGGAGTAA AGGCGCAGTT GGCGATTAAG
CTTTTTGGCC CCGATTTAGA TGTCTTATCA GAAAAGGGAC AAGTGCTCAC CGATCTGGTG
GCGAAAATCC CCGGCGCCGT GGATGTGTCC CTCGAGCAGG TCAGTGGTGA GGCGCAGCTG
GTAGTGCGGC CAGACCGCTC GCAGCTTGCC CGTTATGGCA TCAGCGTCGA CCAAGTGATG
TCGCTAGTCA GCCAAGGGAT AGGCGGTGCC AGCGCCGGAC AGGTGATCGA CGGTAACGCG
AGATACGACA TCAATTTGCG CCTCGCAGCA GAGTATCGCA GCAGCCCAGA TGTGATTAAA
GATTTACTCC TTAGCGGCAG CAATGGTGCC ACAGTGCGTT TAGGTGAGGT GGCCAGCGTT
GAGGTGGAAA TGGCGCCGCC GAATATTCGC CGTGACGATG TGCAGCGCCG TGTGGTGGTG
CAAGCCAACG TGGCGGGTCG GGACATGGGA TCTGTGGTCA AGGATATCTA TGCGCTGGTG
CCTCAGGCCG ATTTGCCCGC GGGATACACA GTGATTGTGG GTGGTCAGTA TGAGAATCAG
CAAAGAGCAC AACAAAAGCT GATGTTGGTA GTGCCTATCT CTATCGCCTT GATTGCCTTG
CTGTTGTACT TCTCCTTTGG TGCGGTGAAG CAGGTCTTAT TGATCATGGC AAACGTGCCT
CTGGCATTGA TCGGCGGTAT CGTGGCGCTG TTTGTCAGCG GCACTTATCT GTCGGTACCG
AGCTCCATTG GCTTTATCAC TCTGTTTGGG GTGGCGGTGC TCAATGGTGT GGTGTTAGTG
GACTCGATTA ACCAGCGCAG GCAGAGCGGC GAGTCGCTCT ATGACTCGGT TTACGAAGGC
ACGGTTGGCC GCTTACGCCC CGTGCTGATG ACTGCCTTGA CCTCGGCCTT GGGCTTGATC
CCCATCTTAG TGTCATCGGG TGTGGGTAGC GAAATCCAAA AGCCGCTGGC GGTGGTGATT
ATCGGTGGGC TGTTTAGCTC TACGGCACTG ACGTTATTGG TGTTACCGAC CCTGTATCGT
TGGTTATATC GCCACGATAA GTCGCCCGCC TAG
|
|---|
| Protein sequence | MLQKAIEAAI KNRLLVVLAL LAVVAASVAM LPKLNLDAFP DVTNVQVTIN TAAEGLAAEE
VEKLISYPVE SAMYALPAVT EVRSLSRTGL SIVTVVFAEG TDIYFARQQV FEQLQAAREM
IPSGVGVPEI GPNTSGLGQI YQYILRADPS SGINAAELRS LNDYLVKLIM MPVGGVTDVL
SFGGEVRQYQ VQVDPNKLRA YGLSMAQVSE ALESNNRNAG GWFMDQGQEQ LVVRGYGMLP
AGEAGLAAIA QIPLTEVRGT PVRVGDIAKV DFGSEIRVGA VTMTRRDEAG QAQALGEVVA
GVVLKRMGAN TKATIDDIDA RINLIEQALP KGVSFEVFYD QADLVDKAVT TVRDALLMAF
VFIVVILALF LVNIRATLLV LLSIPVSIGL ALMVMSYYGL SANLMSLGGL AVAIGMLVDG
SVVMVENIFK HLTQPDRRHL AQARSRVDGE VDPYHGDEDG SVRAVEADNS MAVRIMLAAK
EVCSPIFFAT AIIIVVFAPL FALEGVEGKL FQPMAVSIIL AMISALLVAL IAVPALAVYL
FKRGVVLKES VVLAPLDSAY RKLLSATLAR PKLVMISALL MFAMSMVLLP RLGTEFVPEL
EEGTINLRVT LAPTASLGTS LDVAPKLEAM LLEFPEVEYA LSRIGAPELG GDPEPVSNIE
VYIGLKPIEE WQSASSRLEL QRLMEEKLSV FPGLLLTFSQ PIATRVDELL SGVKAQLAIK
LFGPDLDVLS EKGQVLTDLV AKIPGAVDVS LEQVSGEAQL VVRPDRSQLA RYGISVDQVM
SLVSQGIGGA SAGQVIDGNA RYDINLRLAA EYRSSPDVIK DLLLSGSNGA TVRLGEVASV
EVEMAPPNIR RDDVQRRVVV QANVAGRDMG SVVKDIYALV PQADLPAGYT VIVGGQYENQ
QRAQQKLMLV VPISIALIAL LLYFSFGAVK QVLLIMANVP LALIGGIVAL FVSGTYLSVP
SSIGFITLFG VAVLNGVVLV DSINQRRQSG ESLYDSVYEG TVGRLRPVLM TALTSALGLI
PILVSSGVGS EIQKPLAVVI IGGLFSSTAL TLLVLPTLYR WLYRHDKSPA
|
|---|
| |