| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3443 |
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| Symbol | |
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| ID | 4255450 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4079841 |
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| End bp | 4083044 |
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| Gene Length | 3204 bp |
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| Protein Length | 1067 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 638124128 |
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| Product | MscS mechanosensitive ion channel |
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| Protein accession | YP_739481 |
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| Protein GI | 114048931 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3264] Small-conductance mechanosensitive channel |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACGTA TTTTATTGTT CGTTATTGCT TTTTTCTCTT TTTCTCTCCA TGCCAATTCG
CCACTGCAAT TGGACAAGCG CCTTGGCTTA AACAACCAAA ATCAGCAACA AAATATTAGC
ATTGACGATC AAATTGTTGA GCTTAAAAAC AACATTGATA GATTGGCAGC GAATGCCAGC
AGTTTTCAGC AGGCTCAGCT CGATTTTGAA GAAAACAAAA AGGTCATCGA CCAGGGCTTA
AAAGAAGCCG CCAAGCCCTT AAAGCTGGAC AAAGCCACGG ATCTCAACCA GCAAGCCTCG
ATGGCTTATT TACGACTGTC GGAATTAAAA GAGAGCGAAA CGGCCCTAGG CAATCAAGTC
AGCGAACTGT TGCAACGCCA TAATCAGCTG CCCTCCGTCA TCGCCAACGC AAGACAGAAT
GTGCTGCAAA ATAAGAAAAC CGACTTGGCC CCACTGGATA CGCCAACGGG CGAACTACAG
CAAACGCAGC GGATTTTCTT CGAGCAAAGC CTCGCCACTA ACGAGGCTGA GCTTGCCAGC
AGCCAAAAAC GCATCGAACT CACCCAGTTA CAGTTACAGT TGGTTCGCCA GCAATTGAGC
CAACAGGAAG CCTTTATTGA AACCATCAAT AAGGCGATGA ATAAACAGCG CCAGCAACAA
ACCGATGCAA CCTTGGCCAA GAATTTAGTG GATACCGCCA AGGTCGTGGA TCCTGTGACC
CGCAATATTG CCGACACTAA CCAAATCTAC GGCCAAAAGT TACAAACCTT AACCTTGCAA
ATCAACAATG TGGTTGAGCA GCAAGAGCAG GCCGAACTGC AATATCAATC CCAAGCCAAA
CAGCTGGCGA ATATCCAAGA GCAAATCACT TGGGTCAAAA TGAACTCCGC CTTTGGCGAG
CGTTTTCTGC AGATGTTGCA ATCTCTGCCT AAGCCGCCAA ACCATGAGAA GCTACAAACT
CTGATCGCCG ATGCTCGCCT CGATAGGTAC CACCTCGAGC AACAACAGGC GCTCAACGAA
CAAGAGTTAG AGCAAACCAA CCTCTACAAC GAGGGACAAA TTAAGCTACT GCGCTCACAA
CAAGCGCTGC TGACGCAGTT GATGCAGAGT TATGACCAAT ATTTGAGTGA GCTTGGCAAA
CTCAAAGTCA ATTATCAGCA ACTTAGCCAG CAACACCTGA CCTTAAAAAA CACCCTCAAC
GAGCACTTGT TTTGGGTACC CAACGCCGCC AGCATGAACA AACTCTGGCT CACCGACGTG
CAACGCAGCG CCCTGTGGCT CATCCAAGAA GCGCAGTGGG GACAATTGGG CAAAGCCTGG
CAGGAGCAAA ATGACTACTG GTCCTGGTGG ATCATTCTGT TAGTGCTTTG CTTGGTCATC
CAAGATTTAA TCCGGCCTAA GTTCAAACGC TTACTCAGCC ACTATGTCAC CTACGTGGGT
AATGTGACGC AGGATAAATT TATCTACACC TTTAAATCCT TAGTCCTGAG CCTTGGTTAT
GCCCTAATAA AACCGCTACC CATAGTGGCG GCGGGATGGA TTTTCTATCA ATCCGAACGT
AACTTTGTGC AGGCCGTCGG CATGGGGATT TTAGCGATAG GATTGGTTTA CCTATTGTAT
CGCTTGATAT TTATTCTCGC CCTCGACAAA GGGGTCTTGG TTGGCCATTT CAAACGCCCC
TCAAAACTCA TCCAAGCAGG TCAGCTAAGG CTCAAACACT TTGTGTTTGT CGCCAGCCCC
CTGCTCGGCA TTATGGGATT TACCGAAGTC CTCGACGCTT CCCTTATCCG TAATAGCATT
GGCCGCGGTG CATTTATCTG TTTTTGCGTA GTTTTATTCT TGTTATACAA GGATATCTTG
GTGCTAAGCC GCCAAAATAG CGACACCCAA AAGGATGGCA AAAACAAACG ACTGCTGCAA
AAAATGCTCT GGGCGCTATT GATCTCTGTA CCTCTGCTCA GTGCCGGACT CGCCTTTAGG
GGTTACTACT TCACCGCCTT CCAAATGCTG TTGCAGTTAC AACTCTCCAT CGTATTGGGA
TTAAGTTTCT TACTGCTTTA TCAATTAATT AAGCGTTGGA TGTTGATCGA GCGACGCCGT
ATTGCCTTCG ATCGCGCCAA GGCTAAGCGG GCCGAACGGT TAGCGCAGCG GGAAAAGGGC
GAGACTCACC ATGTTTCTAG CGATGGCCTT GATACCTACG AAGAGCCAGT CGTCGACCTC
GAAACCATTT CGAGTCAGTC CTTAGGCTTA GTCCGCTCTT TATTGCTACT CGCATTTTTA
GCGAGCTTGA TTGGCCTGTG GACGCAAACC CATACGGCGC TATTTTCCTT CTTAGATGGC
ATCACCCTCT GGACCACAAA CACCAGCGTC AATGGTGTCG AGCAGCAGCT GCCTATCACC
ATGAAATCGC TGTTATTGGG CTTAATCATC GTTGGCTTCT CGCTGATGAT TGCCACCAAT
TTACCCGGTC TGCTCGAACT GATGATCCTA CAACGGCTCG ATCTGACGCC GGGCACCGGC
TTTGCCATCA CTACGGTAAG CCGTTATTTA GTGGTGTTTT TAGGGCTATT GATTGGCTTT
TCAAATCTCG GAATGGAATG GTCAAAACTG CAATGGCTGA TTGCCGCGCT ATCACTGGGT
CTAGGTTTTG GTTTGCAGGA AATTTTTGCC AACTTTATCT CGGGCCTGAT TATCCTATTC
GAAAAGCCAG TGCGTATTGG CGATACGGTG ACGATCCGCG ACTTAACGGG GACTGTGAGC
AAAATCCAGA TCCGCGCCAC CACCATTATC GACTGGGACA GAAAGGAAAT TATCATTCCT
AACAAGGCCT TTATTACCGA GCAATTGATT AACTGGTCAC TATCAGACCC CATCACACGG
GTGATAGTGC ATGTGTCGGT TGCCCGCGAT TCGGATCCAG CCAAAGTTGA GGCAACGCTA
TATCAAGCGG TGCAGGAATG TGAAGATGCA CTGGCAAATC CAGAGCCGGA GGTCTGGTTT
GCGGGCTTTG GCAAACATAC CCAAGATTAC GAAGTACGTG CCTACGCAAA AGACATGTCA
GCCCGTTGGC CACTACGCCA CGATCTGCAT AAACGCATTA CCCGTAAACT GAAAGAAAAC
AACTTAGAAC TCGCCTATCC GCAAATGGAA ATCCATCTTA AAAATGGCCA GAATCGCGAT
CAGGTCGGCA TTATCCGCAG TTAA
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| Protein sequence | MPRILLFVIA FFSFSLHANS PLQLDKRLGL NNQNQQQNIS IDDQIVELKN NIDRLAANAS
SFQQAQLDFE ENKKVIDQGL KEAAKPLKLD KATDLNQQAS MAYLRLSELK ESETALGNQV
SELLQRHNQL PSVIANARQN VLQNKKTDLA PLDTPTGELQ QTQRIFFEQS LATNEAELAS
SQKRIELTQL QLQLVRQQLS QQEAFIETIN KAMNKQRQQQ TDATLAKNLV DTAKVVDPVT
RNIADTNQIY GQKLQTLTLQ INNVVEQQEQ AELQYQSQAK QLANIQEQIT WVKMNSAFGE
RFLQMLQSLP KPPNHEKLQT LIADARLDRY HLEQQQALNE QELEQTNLYN EGQIKLLRSQ
QALLTQLMQS YDQYLSELGK LKVNYQQLSQ QHLTLKNTLN EHLFWVPNAA SMNKLWLTDV
QRSALWLIQE AQWGQLGKAW QEQNDYWSWW IILLVLCLVI QDLIRPKFKR LLSHYVTYVG
NVTQDKFIYT FKSLVLSLGY ALIKPLPIVA AGWIFYQSER NFVQAVGMGI LAIGLVYLLY
RLIFILALDK GVLVGHFKRP SKLIQAGQLR LKHFVFVASP LLGIMGFTEV LDASLIRNSI
GRGAFICFCV VLFLLYKDIL VLSRQNSDTQ KDGKNKRLLQ KMLWALLISV PLLSAGLAFR
GYYFTAFQML LQLQLSIVLG LSFLLLYQLI KRWMLIERRR IAFDRAKAKR AERLAQREKG
ETHHVSSDGL DTYEEPVVDL ETISSQSLGL VRSLLLLAFL ASLIGLWTQT HTALFSFLDG
ITLWTTNTSV NGVEQQLPIT MKSLLLGLII VGFSLMIATN LPGLLELMIL QRLDLTPGTG
FAITTVSRYL VVFLGLLIGF SNLGMEWSKL QWLIAALSLG LGFGLQEIFA NFISGLIILF
EKPVRIGDTV TIRDLTGTVS KIQIRATTII DWDRKEIIIP NKAFITEQLI NWSLSDPITR
VIVHVSVARD SDPAKVEATL YQAVQECEDA LANPEPEVWF AGFGKHTQDY EVRAYAKDMS
ARWPLRHDLH KRITRKLKEN NLELAYPQME IHLKNGQNRD QVGIIRS
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