| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3410 |
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| Symbol | |
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| ID | 4254676 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | + |
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| Start bp | 4044229 |
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| End bp | 4044801 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638124091 |
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| Product | 2'-5' RNA ligase |
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| Protein accession | YP_739448 |
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| Protein GI | 114048898 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1514] 2'-5' RNA ligase |
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| TIGRFAM ID | [TIGR02258] 2'-5' RNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0816673 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.509514 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGTTACAAC GACTCTTCCT TGGGTTTGCC CCTACAAGCA TACAGCGGCA ACAACTGCTG
CAGTTGCAGC AAAGCTTGGC GCCGCATTTA GCGCCACATG CTAAACCCGT CATCCAAAGC
AATTTACACT TAACCCTCGC GTTTTTAGGA CTCGCCAATC CGACTCAAGT GGCGCTGTTG
CTCGACGGTG TCGATAAGCT AGCTAAACCG AGATTCAGTG TCACCCTGAG TAGCATCGCC
GCGTGGCCTA AGGCGCAGGT CTGTTGTTTA AAGGGCGATA GCATCAGTCC TGAGTTAGCC
CTCTTAGCAT CACAGGCACA GGATTTAGCC CAACAGTTAC AGTTGCATCT GAGTGAGCAT
CCGTTTCGGC CCCATATCAG CTTGTTTAGA AAGGCAAAGC CGTTAGGCAT CTTGGTCAGT
GAGCTAACGC TTAAGGAGTT GGTACAGCAG AACGTCATCC AAGCTTCGAT GCTTGAACTC
ACGCTCGCAC CCGAGCAGCT GCATTTGTAT CTTTCCGCCA GTGGCGGACG CGGTGTGGAA
TATCAAATCT TACATTCTTG GCCGCTCGCA TAA
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| Protein sequence | MLQRLFLGFA PTSIQRQQLL QLQQSLAPHL APHAKPVIQS NLHLTLAFLG LANPTQVALL
LDGVDKLAKP RFSVTLSSIA AWPKAQVCCL KGDSISPELA LLASQAQDLA QQLQLHLSEH
PFRPHISLFR KAKPLGILVS ELTLKELVQQ NVIQASMLEL TLAPEQLHLY LSASGGRGVE
YQILHSWPLA
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