| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3296 |
|---|
| Symbol | panB |
|---|
| ID | 4255392 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3899927 |
|---|
| End bp | 3900721 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638123979 |
|---|
| Product | 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| Protein accession | YP_739336 |
|---|
| Protein GI | 114048786 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0413] Ketopantoate hydroxymethyltransferase |
|---|
| TIGRFAM ID | [TIGR00222] 3-methyl-2-oxobutanoate hydroxymethyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0421437 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAG TTACTAGCTC AACCCTGTTG AAATACAAAC AGGAAGGTAG AAAATTCACC
GCTCTGACAG CCTATGATGC CAGCTTTGCC AGTGCGTTCG ACGGCGAAGG CATCGATGTG
CTACTGGTCG GCGATTCTTT GGGAATGGTT CTGCAAGGCC ACGATGATAC GCTGCCCGTC
ACGACAGCCG AAATCGCCTA CCACACACGT TGTGTGCGTC GCGGTATCGA GCGCTCACTG
CTGATCGCCG ACATGCCATT TATGAGTTAC GCCACGCCAG AACAAGCCAT GGAAAACGCC
ACTGCACTGA TGCAGGCGGG TGCCAATATG GTGAAGCTGG AAGGCGGTCA CTGGTTACTC
GAAACCGTGA CTAAACTGAC CGAGCGCGGT ATTCCTGTCT GCGCCCACTT GGGCCTTACC
CCGCAATCGG TACATGTTTT TGGTGGCTTT AAAGTACAAG GACGCGATGC TGAAAATGCC
CAGCGCATTC TCGATGAAGC CAAAGCCTTA GAAGCTGCTG GCGCACAACT CTTAGTGGTT
GAATGTATTC CGGAATCTCT CGCCACCGCC ATCACTCAAG CATTAACTAT CCCAGTGATC
GGCATCGGCG CTGGCGCCAC CACAGATGGT CAGATCCTAG TGATGCACGA TGTGCTCGGT
ATTTCGAGTG GTTATATTCC ACGTTTTTCA AAGAACTATC TCAAGCAAAC GGGTGAAATC
CGCTCGGCGG TACGTGCTTA TATTGAAGAA GTGGCCAATG GCACCTTCCC AAGTTCAGAG
CACACATTTA GCTAA
|
|---|
| Protein sequence | MSKVTSSTLL KYKQEGRKFT ALTAYDASFA SAFDGEGIDV LLVGDSLGMV LQGHDDTLPV
TTAEIAYHTR CVRRGIERSL LIADMPFMSY ATPEQAMENA TALMQAGANM VKLEGGHWLL
ETVTKLTERG IPVCAHLGLT PQSVHVFGGF KVQGRDAENA QRILDEAKAL EAAGAQLLVV
ECIPESLATA ITQALTIPVI GIGAGATTDG QILVMHDVLG ISSGYIPRFS KNYLKQTGEI
RSAVRAYIEE VANGTFPSSE HTFS
|
|---|
| |