| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_3198 |
|---|
| Symbol | |
|---|
| ID | 4256227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 3784011 |
|---|
| End bp | 3788309 |
|---|
| Gene Length | 4299 bp |
|---|
| Protein Length | 1432 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 638123882 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_739239 |
|---|
| Protein GI | 114048689 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0493] NADPH-dependent glutamate synthase beta chain and related oxidoreductases
[COG3383] Uncharacterized anaerobic dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01591] formate dehydrogenase, alpha subunit, archaeal-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.554904 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAC TTCGAATCGA TAATCAGATA GTCACGGCCG AGCCGAACGA TAACCTACTT
CGGGCAGCCA GTAAGGCTGG CATAGCAATT CCGAGTCTGT GCGATCCAAC AGACGCCACA
CGGCAATTGG GCGCGGCTCC CCATGCCGAT AAACAGGACT GCAACCTCTG CTTAGTGCAA
ATCGAAAATA CCGATGCCAG CCTGCGCTGC GTTAAAGCCT GTGAAACGCC CGCCGAAGCG
GGCATGAAGG TCATCACCCA ATCGGCATAT TTAACCAAAC AGCGCCAAGC TGCATTGAGC
ACAATTTTAA GTGACCACTT TGCCGATTGT GAGGCGCCCT GCCAGCAAGC CTGCCCCGCG
GGTGTCGATG TGCAAAGTTA CCTGTACCAC ATTGCCCAAG GCGACCATAG CCAAGCCATT
AAAGTCATTA AAGATACCCT GCCGCTGCCG CTGTCGATTG GCCGAGTCTG CCCCGCGTTT
TGCGAGACTG AATGCCGCCG CGGCCTCGTC GATGACCCCA TTGCTATTCG TCAACTCAAG
CGCCACGCCG CCGATTTAGA CTTGGCCGAC GATGAACAAG GTGGCAGTTA TCAACCACCA
CGCCTCGCAG ATACGGGCAA AAAAATTGCC ATTATTGGCG CGGGCCCCGC AGGCTTAAGT
GCCGGTTATT ACCTGTCAAA CCAAGGGCAT AGTGTTGAGA TTTTTGAAGC CATGCCCAAG
GCGGGCGGCT GGCTGCGCTA CGGGATCCCC GAATACCGTT TACCCAAGGC AATTCTCGAT
AAAGAAATAG AGCTGCTATG CCGCAATGGG TTAACCATTC ATACGGATAC TCGTCTCGGC
CATGAAATTC ATTTAGCCCA ACTGGTCGCC GATTTCGACG CTGTGTGCCT TGCCATCGGC
GCCCAAAAGG CGGTGCCGAT GAACTACAAA GGCTCAGAAC TTGCGGGCTG TTACCTGGGG
GTGGATTTTC TTAAGGAACA TTGCCTCGAC AAACAATTGA AGTTGGGCAA AAAAGTCGCC
GTGATTGGTG GTGGCAACAC CGCCATCGAC TGCGCCCGCA CCGCCGTGCG CGAAGGCTGC
GATGTCACCT TAATCTACCG CCGTACCCGC GCCGAAATGC CCGCCGAAGC CTACGAAGTA
CATGAGGCCG AAGTCGAAGG CGTCAAATTC CATTTCTTAA CCAATCCCAT TGAAAATCAT
AGCGATGCCA ATGGACAGGT AGAAGCTGTC ACCTTCAGCA AAATGGCGCT CGGCGACGCC
GATGCCTCGG GCAGACGCGC GCCCGTGGAC ACTGGGGAAA CCTTTACCGA GGCCTTCGAT
ACTGTTATCG CCGCCGTCTC CCAAGCGCCA GATCTGAGTT TTATGCAAGA TCCTATGGGG
CAACTCAGCC ATGGCGAGCT GGCGCTGAGC CGCTGGAACA CCCTGATAGG CTGCGAGCAA
ACCATGTCAT CGGGTGTAGA AAAACTGTTT GTGATGGGCG ATGCCCGCAG AGGTCCTGCC
ACCGCCGTAG CCGCCATTGG CGATGGCCGT AAAGCGGCAA TCGCTATTGA TAAGATGCTA
AAAATCGGCC TTAGCTGCGA TTTACATGCC CATGAGTTTA ACTCGGTCAA AACCATTCCA
AGCGCCCTCA TTCCAAACGC CCTTAAGCAA ACCGAAACAA GCTCAAAAGC AGGGTCAACG
CTTTATCCCC ATACGCCGCG TCAGCCCCGC TTGAAGATGC CCGAACTCAC GGCGCTGCAA
CGGCTACTGA ATTACAGTGA AGTCGAGCTA GGCTTTCCCG CAGATGCCGC CATGCAAGAG
GCGGCGCGCT GTCTCGAGTG CGCCTGTCAG GCTAATACTG ATTGTAAGCT TAGGGATTAC
GCCACGGATT ACGGTGTCGA GGCCAAAAGC TTAGCCACTG AAAATGCACG GCATTTCAGT
GTTGATAAGA GTGCCCCCTT TATTCAATTC GATGCCAACC GCTGTATTAG CTGCGGTAAG
TGCGTCGATG TGTGTCAGCT GCAGAGTGGC CACTGCGCCA TCCAATTTAG CCAAGATTCC
TATCAGGCGC TGCCGCAGGA AATGACTCAA CACATGGAGC GCCGCGCACC GAGAGTCGGC
TTTAGTGCGA GCATGGCCGA TAGCCACTGT GTGCAATGTG GTAACTGTGT ACAGGTTTGT
CCGACGGGCG CACTGGCCGA TGCCCGGGAT AAACGCCAAG GCGATAGCAC TGAGTTAAAA
ACCGCCTCGA CGATTTGTAC TTACTGCGGC GTGGGCTGTC GTCTCGACCT TAAAATCGAC
CCCAAAGCCA ATCGCATTCG CCATATCGAA GGCAATAAGG ACTCGGTCGT TAACCAAGGC
ATGCTATGTG TTAAGGGACG TTTTGGCTTC GATTTTATTC ACAGCGACAA ACGTCTCACT
ACGCCACTAA TACGTAAAAA TGGCGAGCTG CAACCGAGTA GCTGGCCCGA AGCCATCGCC
TATGTGGCAA AACGCTTAAC CGAGATAAAA CAAAAAGATG GCAGCAATGC CCTCGCCAGC
CTAGCCTCGG CCAAGGCCAC CAACGAAGAT AATTTTGTGC TGCAAAAATT TGTCCGCAGT
GTTCTTGGCA CCAACAATAT CGATCACTGC GCCCGCCTAT GCCATTCATC GACGGTAACA
GGCTTGCAGC AGAGTATTGG TAGCGGCGCC ATGACCAATG ATATTCCGAG CATTAAGGAC
TCGGACGTCA TCTTTATCTT AGGGTCGGAC ACCACCTGCG CCCATCCGAT TATCGCCTCG
AAAATTCAGC AGGCGGTGAT GCAGCACGGC GCGCGTTTAC TGGTTGCCGA TCCGAAACGC
GTTGGCATTG CCGAAAAGGC CGAGCTGTAT GTCGCCCACA GACCGGGGAC GGATGTGATG
CTATTAAACG CCATTATGGC GGAAATTATT CGCCACGATT GGCAGGATAA AGCCTATATC
GCCCAGCGTA CCGAAGGCAT TGAGGCCCTC TATGCAGAGT TAGCCAAGGA GGATTACTCC
CTCGAAAACG CGGCGCTCAT CACGGGCGTA AAGGCCGAAG ACATTGCCCG CCTCGCGCGC
ACCATAGGCA CGGCGCAAAA GACCGCAGTT TATTACGCTA TGGGTATCAC TCAGCATACG
ACGGGGCACG ATAACGTCAC GGCTATCTCT AATTTGCAGC TACTTTGCGG CAATATTGGT
GTGTCAGGCG CGGGGATTAA TCCACTTCGC GGCCAGAGCA ATGTCCAAGG TGCCTGCGAT
ATGGGCGCAC TACCCAACTA TTTTACCGGT TACCAAAAGG TCACGGATAT TCATGCCAGA
ATGCGCTTCG AAGACCACTG GCAAACGCCG TTATCGGGGG AGATTGGCGT CACTGCAACC
CATATGATGC ACGATATTGC CAAAGGTAAA ATTAAAGCCT TGTATGTAAT GGGCGAGAAT
CCCGTGCTCA GCGACCCCGA CCAAGCCCAC GTACTTAATG CATTGAGCAA AATCGATTTT
CTGGTGGTGC AGGATATCTT TTTAACCGAG ACGGCCGAGC TTGCCCATGT GGTCTTGCCC
GCCGCCGCAT TCGTGGAAAA ACGCGGTCAC TTTACCAATA CCGAGCGTCG GGTGCAGCGA
CTCGAGCAGG CGCTCGCCTC ACCGGGTGAA GCCTTGCCCG ATTGGCAGAT AGTGCAAGCT
GTCGCTAATG CCATGGGTGC TAACTGGGAC TATGCCAACG AAGAAGCTAT CTGGCGCGAG
ATCAACGAGC TTACTCCGCA GTATCGCGGT ATTCGCTGGG ACAGATTAAG TGCCAATGCC
GAAGGTCAAA TCTCTCAAGG GATTCAATGG CCCTGTCCAG ATGAAACCCA TCCTGGGACG
CCGATTATGC ACCAGAGCCA ATTCACTCGA GGCTTAGGCT TATTTACCCC CGTCAGTTAT
CGCCTACCTG CTGAGATGCC CTGCAACGAG TATCCGCTGA CGCTATCAAC GGGGCGCCTG
TTGGAGCAAT TCCACACGGG CACACTCACC CGTAAAACAC CTGGGCTGGA TTTACTCGGT
TCACCTAAGG TGATGATTTC TGTCTATGAT GCGGAGCAAC TGGGGATACA TAACGGCGAT
AAACTTCGCC TCACTACCCG CCGCGGAGAG ATTGAAATCG ATGCCTTTGT GACTAAACGC
GCCCAAGCTG GGGTGCTGTT CCTGCCATTC CATTTTGTGG AAGCAGCAGC GAATAAACTC
ACCATTAATG CGCTCGACCC TGTGGCTTAT ATTCCCGAAT ATAAGGTTTG TGCGGTCAGG
GCTGAAAAGG TGACAACAAA CGTGAGTGAA ACAGCCTAA
|
|---|
| Protein sequence | MIELRIDNQI VTAEPNDNLL RAASKAGIAI PSLCDPTDAT RQLGAAPHAD KQDCNLCLVQ
IENTDASLRC VKACETPAEA GMKVITQSAY LTKQRQAALS TILSDHFADC EAPCQQACPA
GVDVQSYLYH IAQGDHSQAI KVIKDTLPLP LSIGRVCPAF CETECRRGLV DDPIAIRQLK
RHAADLDLAD DEQGGSYQPP RLADTGKKIA IIGAGPAGLS AGYYLSNQGH SVEIFEAMPK
AGGWLRYGIP EYRLPKAILD KEIELLCRNG LTIHTDTRLG HEIHLAQLVA DFDAVCLAIG
AQKAVPMNYK GSELAGCYLG VDFLKEHCLD KQLKLGKKVA VIGGGNTAID CARTAVREGC
DVTLIYRRTR AEMPAEAYEV HEAEVEGVKF HFLTNPIENH SDANGQVEAV TFSKMALGDA
DASGRRAPVD TGETFTEAFD TVIAAVSQAP DLSFMQDPMG QLSHGELALS RWNTLIGCEQ
TMSSGVEKLF VMGDARRGPA TAVAAIGDGR KAAIAIDKML KIGLSCDLHA HEFNSVKTIP
SALIPNALKQ TETSSKAGST LYPHTPRQPR LKMPELTALQ RLLNYSEVEL GFPADAAMQE
AARCLECACQ ANTDCKLRDY ATDYGVEAKS LATENARHFS VDKSAPFIQF DANRCISCGK
CVDVCQLQSG HCAIQFSQDS YQALPQEMTQ HMERRAPRVG FSASMADSHC VQCGNCVQVC
PTGALADARD KRQGDSTELK TASTICTYCG VGCRLDLKID PKANRIRHIE GNKDSVVNQG
MLCVKGRFGF DFIHSDKRLT TPLIRKNGEL QPSSWPEAIA YVAKRLTEIK QKDGSNALAS
LASAKATNED NFVLQKFVRS VLGTNNIDHC ARLCHSSTVT GLQQSIGSGA MTNDIPSIKD
SDVIFILGSD TTCAHPIIAS KIQQAVMQHG ARLLVADPKR VGIAEKAELY VAHRPGTDVM
LLNAIMAEII RHDWQDKAYI AQRTEGIEAL YAELAKEDYS LENAALITGV KAEDIARLAR
TIGTAQKTAV YYAMGITQHT TGHDNVTAIS NLQLLCGNIG VSGAGINPLR GQSNVQGACD
MGALPNYFTG YQKVTDIHAR MRFEDHWQTP LSGEIGVTAT HMMHDIAKGK IKALYVMGEN
PVLSDPDQAH VLNALSKIDF LVVQDIFLTE TAELAHVVLP AAAFVEKRGH FTNTERRVQR
LEQALASPGE ALPDWQIVQA VANAMGANWD YANEEAIWRE INELTPQYRG IRWDRLSANA
EGQISQGIQW PCPDETHPGT PIMHQSQFTR GLGLFTPVSY RLPAEMPCNE YPLTLSTGRL
LEQFHTGTLT RKTPGLDLLG SPKVMISVYD AEQLGIHNGD KLRLTTRRGE IEIDAFVTKR
AQAGVLFLPF HFVEAAANKL TINALDPVAY IPEYKVCAVR AEKVTTNVSE TA
|
|---|
| |