Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2753 |
Symbol | |
ID | 4258489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 3262259 |
End bp | 3263536 |
Gene Length | 1278 bp |
Protein Length | 425 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638123431 |
Product | two component, sigma54 specific, Fis family transcriptional regulator |
Protein accession | YP_738795 |
Protein GI | 114048245 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00792223 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGATTG AAAATTCGAC GCCCTTTACC GTGCTACTCG TCGATGATGA TGAAGATGTA CTCACTGCAT ACCGCCATTT ATTACAGTTA TCGGGCTACA GCGCTAAGGG CACCCACTCG CCGAGTAAGG CCCTTGCCCT GCTCAATGAT AATTGGAACG GAGTTGTCGT CTCAGATATT TATATGCCGG CGATGAATGG CATGGATTTG CTCAATGAAG TGAAAAAAAT CGATCCCGAA ATCCCAGTCA TCATGATCAC TGGTCATGGT GATATTCCTC TGGCCGTCGA GGCGGTTAAA CGGGGGGCAT TCGATTTTCT CGAAAAACCC CTCGACTCGG CGCAATTCAT CCAACTATTA AAGCGCGCAC AACAGATCCG CCAAGGGATC ATTGAACAAC GGGAAGCGAT TTCGAGCACC TTTAAGGAGC ACCTCTTTGG CACCAGCGAG CAAATCAACC AGATCCGCCA GCAACTGAGC CAGATTGCCA GAATCGATAA AGATGTGATG ATTGAGGGGC AAATTGGCAC GGGCCGACAC TTAGTCGCCT CAGTACTTCA TAGCTTAAGT CAGCATAAAA ACAACAGCTT AATCATCCAT GATTGCAAAG AGTACCCCAG CTTAACCGAG TTAGAGGCCA GCATTGCTAA AGTCCAAAAC GGCACCTTAG TGCTGCGTTC ATTAACTCAA CTGAGCCATG AGCATCAACG CTGGCTATGC ACTCGTTTGC TGGATCAAGA AAGACTCAAC ACCAAAAGCC ATAGAACCAT TTGTATCTTC GATACTAATC CCGACGATGA GGTCAAAACC GGCGCTTTGT TGCCCGAACT CTATTACTAC TTCTCACAGG CTCGGATCCA ATTGCCCACC TTGGCCGAGC GTAAGAGCGA TATTATTCCC CTGTTTCGCA ACTTCCTGAG CCAAAGCTGT AAGCGCTTTG ACATCCCTAT CCCTAAAATT GACTTAAATT ACATAGAGAT CCTCAAGCGC CACCATTGGC CAGGAAACAT CCGCGAGCTG CGAAACCTCG CCGAGCTCTA TGCGGTTGGC ATTATCAAAC TCCCCGGCGA AGAAACCCTT AAATTAGTGC AAGCCCCCGA GGCGCCGCTC GATGAACTCG TCGATGCCTA TGAGAAGCAA GTGATTGAAA ACATTCTGTA TTTGTGTTCA GGCAGGGTAA CAGATGCCGC TAATTACTTA GGGATCCCAC GTAAGAAGCT GTATCTAAGA ATGAAAAAAC TGAACTTGGA GAAAGATAAG TTTAAGCCTA GGTCATAA
|
Protein sequence | MPIENSTPFT VLLVDDDEDV LTAYRHLLQL SGYSAKGTHS PSKALALLND NWNGVVVSDI YMPAMNGMDL LNEVKKIDPE IPVIMITGHG DIPLAVEAVK RGAFDFLEKP LDSAQFIQLL KRAQQIRQGI IEQREAISST FKEHLFGTSE QINQIRQQLS QIARIDKDVM IEGQIGTGRH LVASVLHSLS QHKNNSLIIH DCKEYPSLTE LEASIAKVQN GTLVLRSLTQ LSHEHQRWLC TRLLDQERLN TKSHRTICIF DTNPDDEVKT GALLPELYYY FSQARIQLPT LAERKSDIIP LFRNFLSQSC KRFDIPIPKI DLNYIEILKR HHWPGNIREL RNLAELYAVG IIKLPGEETL KLVQAPEAPL DELVDAYEKQ VIENILYLCS GRVTDAANYL GIPRKKLYLR MKKLNLEKDK FKPRS
|
| |