Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_2410 |
Symbol | |
ID | 4257343 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 2854288 |
End bp | 2855370 |
Gene Length | 1083 bp |
Protein Length | 360 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 638123078 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_738452 |
Protein GI | 114047902 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000315716 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.00636413 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGAAAAAAA TCATAATTAT CATCGCTATT TTGGCTGCGG GCTGGTTTGG ATACCAAAGT ATGCAACCCC AAGCACCGCA GAAAGCTAAT GTTAAGCTCA CCCCTAATGT GGTCATCGCG ACTGCCGCTA TGGCGCCCGT GCGTGACGAA GTCGAAGCCA TAGGCACCAA CAAGGCCTAT GAGTCTGTCA CTATCACGCC TAAAGTCACC GATGTAGTCA CCTCACTCAA GTTTGATGAT GGCGATATCG TCAAAAAGGG CGACTTATTG GTGCAACTGC AAAATGCCGA GCAGATAGCC AAAGTGAAAG TGGCGCAGGT GAAGGTGAGT GACAACCAGC GTGAGTTAGC GCGGATCAGC TCTCTGGTGA CCAGCCGCAC TGTGGCGGAG TTAGAACGTG ACCGCCTGCA AACCTTAATC GATACCACCC GCGCGGAGTT AGAGCAGGCA CAATCATCCC TGAATGATCG CAGCATAGTG GCGCCCTTTA ATGGTCGTTT AGGCCTGCGC CAAGTGAGTG TGGGTAGTTT AGTGACTCCG GGTACTGAGA TCACCACGCT CGATGATATC TCTAAGATTA AATTAGACTT TTCGGTGCCT GAGCGCTTTA TTCAAGACTT ACAGCCCGGC AAACAAGTCG AAGCCAAGGC TGTAGCGTTT CCCGATGAAA TTTTTAAAGG CAAAGTGATT TCTATCGATA GCCGTGTTAA TCCAACCACT CGCGCCGTGA TTGTGCGCGC CGAAATCCCA AATCCGGATT TACGTTTACT GCCCGGCATG CTGATGAAGG TCAAACTCAT CAAGCGCAGC CGTGAGGCCT TGATGTTGCC TGAGTCGGCG ATTATCCCAA TCCAAAAAGA GCACTTTGTT TACAGCGTCA ATAAGGACAA TGTGATTGAG CGTAAGCAAG TCACCATTGG TATTCGTACC CGCGGCTGGG TCGAAATCCT CGGTGGTTTA GAGATTGGTG AAAATGTGGT GATCCGCGGG CTACTCAAAG TGCACCCAGG CGATGTGGTC AAAACCGAAT TGGCTGAGAA GTTTAGCTAT CTTTCCGATG CTAATGCGGA GCCAAGTGTA TGA
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Protein sequence | MKKIIIIIAI LAAGWFGYQS MQPQAPQKAN VKLTPNVVIA TAAMAPVRDE VEAIGTNKAY ESVTITPKVT DVVTSLKFDD GDIVKKGDLL VQLQNAEQIA KVKVAQVKVS DNQRELARIS SLVTSRTVAE LERDRLQTLI DTTRAELEQA QSSLNDRSIV APFNGRLGLR QVSVGSLVTP GTEITTLDDI SKIKLDFSVP ERFIQDLQPG KQVEAKAVAF PDEIFKGKVI SIDSRVNPTT RAVIVRAEIP NPDLRLLPGM LMKVKLIKRS REALMLPESA IIPIQKEHFV YSVNKDNVIE RKQVTIGIRT RGWVEILGGL EIGENVVIRG LLKVHPGDVV KTELAEKFSY LSDANAEPSV
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