| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_2001 |
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| Symbol | |
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| ID | 4258687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 2365724 |
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| End bp | 2366995 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638122668 |
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| Product | inner membrane transport protein YdhC |
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| Protein accession | YP_738047 |
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| Protein GI | 114047497 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00710] drug resistance transporter, Bcr/CflA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.330416 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.000336538 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAACGT CTAGTAATAT CTTTGTAAAT ATGAAGTTTT TTATATTCTT ATTCTATTTG
GCCTTATTAA GCATGTTAGG CTTTATTGCC ACTGACATGT ATTTGCCTGC TTTCAAAGCA
ATTGAAAGTT CGTTCAATTC TTCACCGTCT CAAGTGGCGA TGTCGCTCAC CTGTTTCTTG
GCTGGTTTAG CCTTAGGGCA ACTGATTTAT GGCCCTTTGG TCAGTAAACT CGGTAAACGT
TACGCCCTGA TCCTCGGCCT TGGCATTTTT GCGCTCGCCA GTGTGGCCAT CGCCAATAGC
GACTCGATAC TGATGCTGAA CATCGCTCGC TTCTTCCAAG CCGTAGGCGC CTGTAGTGCA
GGGGTCATCT GGCAAGCGAT TGTGGTCGAG CAATATGATG CCGAAAAAGC CCAGGGGATT
TTCAGTAACA TTATGCCGTT AGTGGCATTA TCACCCGCAT TAGCCCCCAT CCTTGGCGCT
TATATTCTGA ACGATTTTGG ATGGCGTGCA ATCTTTATCT CATTGTGTGT GATTGCCTTT
ATATTGGTGT TGATGACCTT ATACTTCGTG CCGAGCCACG CAGAGCATCA GGATGCTAAG
CCAAGCGCTG TTTCTTACGG GCAGATTTTG AAAAATACCC GTTACCTTGG CAATGTGGTG
ATTTTTGGTG CCTGTTCGGG TGCGTTTTTC GCATATCTTA CTGTATGGCC GATTGTCATG
GAGCAACACG GCTATCAGGC AACTGAGATT GGGCTGAGCT TTATTCCGCA AACCATCATG
TTTATTGTGG GCGGATACGC AAGCAAGTTA TTGATAAAAC GCATTGGTGC CGACCGTACA
CTCAACGTAT TGCTGGCCAT TTTTGGACTC TGCGTTATCT CGATTGTGTT TTTCACCTTA
TTAATGAAGG CGGAAACCAT TTTCCCACTG CTGATTTCCT TCTCGATACT CGCAGCGGCA
AACGGGGCGA TTTATCCTAT TGTGGTGAAC AGTGCTTTAC AACAATTCAC TCAAAATGCG
GCTAAGGCGG CAGGATTACA GAACTTTTTG CAAATCACCA TCGCCTTTGG CGCCTCGAGT
TTAGTCGCAC TCTGGGCAAG TTCTGGAGAA GTTGCCATAG GTTGGGGCAT TCTGAGCTGT
TCATTAGTGG TGATCTTGGG TTATCTGTTA AAAACCGAAC AAACTTGGGC TGATTTTGCC
AAACACTTTA CTGCGCCGGA TCCTGCTCGT CTTGGGATCA ATGCAGATAC GAAGCAAAAT
CAAGCAGATT GA
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| Protein sequence | MKTSSNIFVN MKFFIFLFYL ALLSMLGFIA TDMYLPAFKA IESSFNSSPS QVAMSLTCFL
AGLALGQLIY GPLVSKLGKR YALILGLGIF ALASVAIANS DSILMLNIAR FFQAVGACSA
GVIWQAIVVE QYDAEKAQGI FSNIMPLVAL SPALAPILGA YILNDFGWRA IFISLCVIAF
ILVLMTLYFV PSHAEHQDAK PSAVSYGQIL KNTRYLGNVV IFGACSGAFF AYLTVWPIVM
EQHGYQATEI GLSFIPQTIM FIVGGYASKL LIKRIGADRT LNVLLAIFGL CVISIVFFTL
LMKAETIFPL LISFSILAAA NGAIYPIVVN SALQQFTQNA AKAAGLQNFL QITIAFGASS
LVALWASSGE VAIGWGILSC SLVVILGYLL KTEQTWADFA KHFTAPDPAR LGINADTKQN
QAD
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