| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1895 |
|---|
| Symbol | |
|---|
| ID | 4258775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | + |
|---|
| Start bp | 2238248 |
|---|
| End bp | 2239471 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 638122550 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_737941 |
|---|
| Protein GI | 114047391 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.375794 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.452206 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGCGC TCGCCACATG GCAGGATAAA TGTATCGATA GCCAATTGCT GGTGGCAAGT
TTAGTAATGT TGTTTAAGCA GCGTGAACTG GATACTGATA AGTTACTGCG CGGGACGGGG
ATTTTTATCG CGGATATTCG TAAACCCGAT CACCTTATTA GCCCCAAGCA ATTATCACGA
CTGCTGGATA ATGCGCTCTC CCTGTGGCCA AGTGGCGATT TAAGTTTTTT ATTGGGTCAA
CGTTGGTTGC CATCCCAAAG CGGCGCGCTG ACGGCGGCCA TGTTTTGCGC GCAGGATTTA
CAGGCATTAA GCCGCGTTTG GCATAAGTAT CATTGGCTCA CTCAGCCCTG GCTGCAAACT
TGGTGCTGTC AAGGCGAGCA TGAGTGGCAT TATCTCGTGA GTCTTGACTT AGGTATGCAG
CGCCATCGGC AATTTTTGAT TGAGCTGAGT CTGTCGTCGC TCACCGCTGC CTGTAAGCAG
CTGCTTGGGC AAGCTTGGCG TGGCAGTCTG TGTTTTCCCT ACCGCGCGCC GGATAATTTG
GCCCATTACT ATAAATACTT TGGTACCGAC TTAAGTTTCG ATGCGCCCCT TTGCCGGATT
TCAATGACTA AAGCCCAGTT GCGTCTACCC TCATTATTTG CGCGCCAGAG CGCGGCCTAT
GCCGTATCAA CTGGGGAAGA GAGGGATGAC AATCTCATTC ATCTTAGCGC TAGTCATTCT
GCGGGTGACT CACTAACCTT AGTATCTCAA GCCACAGCGT CGCAAACTAT CGTAACTCAA
GCCACAGCGT CGCAACCTAT CGTGTCTCGT CAGAATAGGC TGGATCAGGC GCCAAACATA
ATGTCAGCGC CAGATATCGC TCCAGCGCCG AATATGACCC TCGCGGCTCG CCAAGCGTTG
TTAGCGCACG AGTTTCGCCT TGGGTTGGCG GGTGGGATCC GCCTTAAACT GATGCGCAGC
ACTCTTTCCT TGCCAGAGAT GGCACAATCG CTGGAGATGA GCCCCGCAAC CTTGAAACGC
CGCCTGACGG AGATGGGCTT AAGTTACGGG CAACTTGTCG ACGAAACGCG TTTGATCCGG
GCGCTGTATT TTTTAGCCGA ACCCGAGCAA GATGCGCACA CGATTGCCAA TTCTCTATCC
TTTAGTGATG CCAGTAATTT CAGGCGTTCC TTTAAACGTT GGACAGGTCA ATTGCCTGCG
TATTTCCGCT TTTGGTTAGC CTAG
|
|---|
| Protein sequence | MRALATWQDK CIDSQLLVAS LVMLFKQREL DTDKLLRGTG IFIADIRKPD HLISPKQLSR
LLDNALSLWP SGDLSFLLGQ RWLPSQSGAL TAAMFCAQDL QALSRVWHKY HWLTQPWLQT
WCCQGEHEWH YLVSLDLGMQ RHRQFLIELS LSSLTAACKQ LLGQAWRGSL CFPYRAPDNL
AHYYKYFGTD LSFDAPLCRI SMTKAQLRLP SLFARQSAAY AVSTGEERDD NLIHLSASHS
AGDSLTLVSQ ATASQTIVTQ ATASQPIVSR QNRLDQAPNI MSAPDIAPAP NMTLAARQAL
LAHEFRLGLA GGIRLKLMRS TLSLPEMAQS LEMSPATLKR RLTEMGLSYG QLVDETRLIR
ALYFLAEPEQ DAHTIANSLS FSDASNFRRS FKRWTGQLPA YFRFWLA
|
|---|
| |