| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1591 |
|---|
| Symbol | cpdB |
|---|
| ID | 4257676 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1869127 |
|---|
| End bp | 1871184 |
|---|
| Gene Length | 2058 bp |
|---|
| Protein Length | 685 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 638122244 |
|---|
| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
|---|
| Protein accession | YP_737646 |
|---|
| Protein GI | 114047096 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.144271 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAAATA AAAAACTACT CGCAGTGATG ATCACTGCCG CCTTAGGCGT AAGCGCCTGT
GGCTCGGATG ATGAGCAAAT CGTTCAAGCG GATTTACGTG TATTAGAAAC CACGGATCTG
CACACAAATA TCATGGATTT CAACTACTAC AGTGGTAAAG AAGACCCAAC AATTGGTCTA
GCTCGTACCG CAAGCCTGAT CCATGCAGCC CGTAAAGAAG CCAAAAACAG TGTACTCGTA
GATAACGGCG ACCTGCTTCA AGGTAGTCCT ATGGGAGACT ACATGGCTAA AGTCGGCCTA
CAAATGGGCG ATGTTCACCC AGCCTATAAA GCGATGAATC TATTAGATTA CGAAGTAGGT
AATATCGGTA ACCACGAATT TAACTATGGT TTAGATTTTT TAAATAAATC ACTTCATGGT
GCAGAGTTCC CTTATATTAA CGCCAACGTC TATTGTGCCG ACGATAATGG CTGCTGGAAT
GATGTGAAAA AAGGTGAGCA TTTATTCACC CCTTATATCA TTAAAGAAAA GCAAATCGTC
GATAGCGAAG GAAATAACCA AACCATTAAG ATTGGTTATA TTGGTTTTGT GCCACCACAA
ATTTTATTGT GGGATAAACA AAATCTGACA GGCAAAGTTA CGGTTGAAGA TATTGTGGCG
ACCGCTAAGA AATATGTGCC TGAAATGAAA GCTAAAGGCG CTGATCTGAT TATCGCAATC
CCACACTCAG GTATTGGTTC GACCGAAAAT CCTGGCGATC CTATGGCAGA GAACGCAACC
TATGCCTTGA CCTATGTCGA CGGTATTAAT GCCATCCTCT TTGGTCACAG CCACTCTATT
TTCCCCGATG CCAAATATGC CGACTTACCT AACACAGACG TGACTAAAGG TCTGTTAAAT
GGTGTACCAG CCGTCATGCC TGGACGCTGG GGTGACAACT TAGGTGTGGT CGACTTTAAA
CTCGAACGTA AAGACGGTAA GTGGTCTGTG CTCAGTGCCA CCACTAAGGC ACGTCCTATC
TATGATGGCG CAACCAAAAC ACCATTAGTC GAAGCCGACG CCGCCATCCA TGATGCTGTC
GCCGCCGAGC ACCAAGGGAC CCTCGCCTTC GTGGACGAAC CGATTGGGGT TGCTGCCGCC
GATATGTATA GCTTCTTGAC CTTAGTGCAG GACGATCCAA CCGTTCAAAT CGTTTCTGAC
GCGCAAATTG CCAACGTTAA AGCCAAACTC CCCGAGGCAT TAAAAGATCT ACCAGTTTTA
TCGGCCTCTG CGCCATTCAA AGCCGGTGGT CGCCACGGAA CAACCAGCGA TGCAGACCAA
TATGTACAAG TCGATAAAGG CGCATTGACC TTTAAAAACG CCGCCGATCT TTACCTCTAC
CCCAACACTA TGGTGGCGGT TAAAGCGACG GGGGCTGAAC TGAAAGATTG GCTGGAGTGC
TCGGCTAACC AATTCAATCA AATCGATCCA ACCAAGACTA CGCCGCAGGA GTTAATCAAC
TGGGATGGTC ACCCAACCTA TAACTTCGAC GTGCTCGATG GCTTGACCTA CAAGATTGAT
GTCACTCAAC CAAGCAAGTT CGACCGCGAC TGCGCCGTCG TCAATGCCAA TGCTAACCGT
ATCGTCGATT TAAGCTACAC AGATGCCAAC GGTAAAGTCT TCACTGGCGA AGAGTTTGCG
GCCAAAGAAT TTATCGTGGC CTCAAATAAC TACCGCGCCT TTGGTGGCAA GTTTGCCGGT
ACAGGCAGTG ATCATGTGGT ACTCGAACTG CCAGATACTA ACCGTGAAGC CTTAGCGGCC
TACATCACGG CGCAATCTCA GTTCAACGAA ACCACAGGCA AGTATGATGG CATGGTCAAC
CCAAGTGCTG ACTACAACTG GGATTTCAAA ACCATCAGCA CCAATGTTGC GTTAGATATT
CGCTTCCAGA CCCAAGATAG CGATAAAGCC GCTGCCTTTA TCGAAGCCAA TAAACAACGC
GAAATGACCA AGATGAGTAA AGATGAACTC GGTTTTGCCG TGTACCGCAT CAACCTAAGC
CAAGATAAAG CGAAGTAA
|
|---|
| Protein sequence | MLNKKLLAVM ITAALGVSAC GSDDEQIVQA DLRVLETTDL HTNIMDFNYY SGKEDPTIGL
ARTASLIHAA RKEAKNSVLV DNGDLLQGSP MGDYMAKVGL QMGDVHPAYK AMNLLDYEVG
NIGNHEFNYG LDFLNKSLHG AEFPYINANV YCADDNGCWN DVKKGEHLFT PYIIKEKQIV
DSEGNNQTIK IGYIGFVPPQ ILLWDKQNLT GKVTVEDIVA TAKKYVPEMK AKGADLIIAI
PHSGIGSTEN PGDPMAENAT YALTYVDGIN AILFGHSHSI FPDAKYADLP NTDVTKGLLN
GVPAVMPGRW GDNLGVVDFK LERKDGKWSV LSATTKARPI YDGATKTPLV EADAAIHDAV
AAEHQGTLAF VDEPIGVAAA DMYSFLTLVQ DDPTVQIVSD AQIANVKAKL PEALKDLPVL
SASAPFKAGG RHGTTSDADQ YVQVDKGALT FKNAADLYLY PNTMVAVKAT GAELKDWLEC
SANQFNQIDP TKTTPQELIN WDGHPTYNFD VLDGLTYKID VTQPSKFDRD CAVVNANANR
IVDLSYTDAN GKVFTGEEFA AKEFIVASNN YRAFGGKFAG TGSDHVVLEL PDTNREALAA
YITAQSQFNE TTGKYDGMVN PSADYNWDFK TISTNVALDI RFQTQDSDKA AAFIEANKQR
EMTKMSKDEL GFAVYRINLS QDKAK
|
|---|
| |