Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_1465 |
Symbol | |
ID | 4255627 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | - |
Start bp | 1701561 |
End bp | 1702124 |
Gene Length | 564 bp |
Protein Length | 187 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 638122114 |
Product | RNA polymerase sigma factor |
Protein accession | YP_737521 |
Protein GI | 114046971 |
COG category | [K] Transcription |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.291082 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00185195 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTTTGCTA ACTGGCGAAA GAAATCCGTC GAGCCTGCGG TCTCTTCTGA CATGCTGAGC AAACAACGAC GATACAACAG CCTAGTCAAG GCGCTGCACG CCGATATCTT CCGCTATGCC TTTTGGTTAT GCGGCGATAA GCAGGTGGCA GAAGACATCA CCCAAGAAAC CTTCTTGCGG GCATGGCGCT CTTTAGATTC CCTACAGGAT GATAAAGCGG CGAAGGCTTG GCTGATCACG ATTCTGAGGC GCGAAAATGC CCGTCGATTC GAGCGCAAAC AATTTGATTA CGCCGATGTC GAACAAGACA GCTTAGAGGA TCACCTCGCC TCCAGCACGG AAGAGCAAAC CGAGCAGTAC TGGTTAAGGC GACAAATCGC TAAGCTGGAT ATTGAATATC GGGAGCCCCT ATTGCTGCAG TTAATCGGCG GTTTTAGTGG TGATGAAATC GCCCAACTCT TGGAGTTAAA CCGTAACACA GTGATGACAC GCTTATTTCG GGCGAGAAAC CAATTGAAAG AACTACTTGA GAAAACCGAT CTGAGAGGTC AATCCAATGG ATGA
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Protein sequence | MFANWRKKSV EPAVSSDMLS KQRRYNSLVK ALHADIFRYA FWLCGDKQVA EDITQETFLR AWRSLDSLQD DKAAKAWLIT ILRRENARRF ERKQFDYADV EQDSLEDHLA SSTEEQTEQY WLRRQIAKLD IEYREPLLLQ LIGGFSGDEI AQLLELNRNT VMTRLFRARN QLKELLEKTD LRGQSNG
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