| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_1415 |
|---|
| Symbol | |
|---|
| ID | 4258426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 1635175 |
|---|
| End bp | 1638249 |
|---|
| Gene Length | 3075 bp |
|---|
| Protein Length | 1024 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638122049 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_737471 |
|---|
| Protein GI | 114046921 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1228] Imidazolonepropionase and related amidohydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.42132 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.197349 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATAA ACAATAAGAT AATAATAAGC TGCGGCATTA TAAGTAGTTT TGTATCCCAC
AACATTTTTG CCGAGGCCAA TCCCATCTCC CCCGTCAATA AGTTAACGGC CTTTACTAAT
GCTGAATTAA TCATGGCGCC AGGGAAGCGA CTCACAAATG CCACCTTATT AGTAGAAAAT
AATCGGATCA AAGCCATTAT TGAAAAAGGG GATATTCCAG AGGCAGCATT AAAGGTTGAT
CTCAGTGGCT ATACTATCTA TCCCGGTTTT ATCGATCCCT TTACCGATTA TGGTATCGAG
TTTGAATATC CCAAATTGGC GCTGACTCGT CCGGTATATG ATATTAAACG TATCGGTGGC
AATGCCGAAA ATGGCGCAAT TCACGCTGAA AAAGAATGGT TTAATTACGT TTACCCAAAT
AAAGAACGCG CACGTGATTG GATCAATAAC GGCTTTACCA GCGTGCAAAG CAGTAAACTC
GACGGTATTT TCCGCGGTAC GGGTGTTAGC CTTTCATTAG CCGATAAAAC CGCCAACGAG
GTGATTTATC GTGCACGTAG CCAACCTTTT ATGGCCTTCG ATAAAGGCAC GTCTGAACAA
GACTACCCCA ATTCTCTGAT GGGCAGTATT GCACTTATCC GACAAACCTT TGCCGATGCT
AACTGGTATA ACCAAAATAA GCACAAATCG GTTAATAGTT CAGCAAATCC TCAAATTGAA
TTTAATATCG CCTTCGAACG CTTAGATAAC TTAGCCGAGA AACAAATCGT CTTTGAAACA
AAAAACCTCA ACGATCTGCT GCGCGCCGCT AACCTGCTCA AAGAACATCA GCAGCCCGCC
AACTTACTCG CGAGTGGCCA AGAATATGCG CGTATCAATG AGTTAAAGGC CCTGAATTAC
CCTCTGATCC TGCCGCTCAA CTATCCGCAG GCATCGGATG TGGGTACCGA TGATGCCGAT
CGTGAAGTCA GCCTTGCAGA ACTCAGACAA TGGGAACGCG CCCCCACAAA CCCAGCTGCT
GTGGCCAATG TGGACATCCC TTTTGCCTTT ACCCAATTTG GCATTAAGAC CGAAGCATTT
TGGCCTCGCC TACGTCAAGC CATCGCTCAG GGCCTGAGCG AAGACAAGGC CCTCGCCGCG
CTGACAACTC AAGCCGCCGA AATGACGGGG ACGGCCGAGT TCGCCGGTAA ACTGGCTCCC
GGCTATATGG CCGACTTTGT GATTACTAAG GGCAATATCT TTAAGGATGG CCAGATTTAC
AGCGTCTGGC TGCAAGGCGA AGAACAGTCC ATTCGCTCAC TCCCACAAGC CAAACTCTTG
GGCGATTATC AGCTCACGCT GAATAATCTC ACCTTAGATC TAAGCCTTGA AGAAACGGGC
AAAGCGGGCA AAACCGCCTT CCAAGGTCAG CTGAGTAGTG GTGAGAAGAG CATTACACTC
ACCAATCTTC AGCTTGAAGA CGACGGCCGC GTAAGCTTTA ACGCCGATTT AAGCGATGCG
GGCATTCATG GCATCAGCCG TTTTACCCTC TGGCTCGCTA AAGATGGTAT TCAAGGCCGC
ATGGTGGACG CCAAAAGTCG CAGTATTAAT GTGGCGGGTA TTGCTATCGC TTCGAGTTTA
AAGACGGAGC AAGAAAGCAC GCCCAAAACC GATGCTGCAG CGACTTTAGT GAGTCAACTC
ACCTACCCTA ATGTTGCCTA TGGTTTGAGC GAGGCGCCAA AAGCCGAAAA ACTCCATATT
AAAAATGCCA CCCTGTGGAC CTCGGATAAA CAGGGGATTT TGGAACATGC GGATCTGTTA
ATGGCCAATG GCCGAATTGA AAAAATCGGT CAGCAACTCA GCACGCCTTC GGGTTATCAA
GTTCTCGATG CAACGGGTAA ACACTTAACT GCGGGTATCG TCGATGAACA TTCCCATATT
GCTATCAATG GTGGCACTAA TGAAGGTACA GATGCAGTCA CCTCTGAGGT GCGGATTGGT
GATGTGATCA ATCCCGAAGA TATCTCCATC TACCGCGCAC TCGCGGGCGG CGTCACCAGC
GCACAATTAC TCCATGGCAG CGCTAACCCA ATTGGTGGCC AATCCCAGCT AATCAAGATG
AAATGGGGTG AAAGTGCCGA GCAGCTTAAA TTTGCCAATG CCCCTGCCAG TATCAAATTC
GCCCTTGGTG AAAACGTCAA ACAGAGTAAC TGGGGCGAGA AGTTTGTTCA GCGCTTCCCG
CAGACTCGCA TGGGCGTCAA AGCCTTATTT GAAGAAACCT TCGATGCCGC AATCACCTAT
GAGAAAGCGC TGAAGGACTA CGATGACTTA CGCAGCAGTG AGAAGAAGAA AACCATTTCG
CCGCGCCCTA GCTATCGCCT TCAGGCGGTT GCCGAAGTGT TAAAGCAGCA GCGCGATGTG
CATATCCACT CCTACGTGCA GTCAGAAATA TTAATGTTCC TGCGATTAGC CGAAGCCTAT
CACTTTAAAG TGCAAACCTT TACCCACGTG CTCGAAGGTT ACAAGGTTGC CAGTGAACTA
GCCGCCCATG GCGCAGGCGC CTCGACCTTT GCCGATTGGT GGGCCTATAA GTTCGAAGTC
TATGATGCAA TTCCACAAAA CGCCTGCCTA ATGCAAAAAC AGGGCGTGCT CACCAGCATC
AACTCTGACG ACTACGAAAT GCAGCGCAGA CTTAACCAAG AAGCGGCTAA GTCAATGATG
TATTGCGATA TGTCCAAAGA AGATGCCTGG AATATGGTGA CCATCAACCC GGCGAAACAG
CTCAGAGTCG ATGAGTATGT TGGCTCACTC ACCCCAGGCA AAATGGCTGA TATAGTGCTT
TGGAATGCCG AGCCGCTGTC GATTTACGCC AAAGTGACCC AGGCTTGGGT CGAGGGTAAA
CGCTATTTCG ATCGCGACCA AGACCAGCTT GCCCAGCAGC AAGTGATGGC TGAGCGCGCC
GCCCTTATCC AAAAAATTCT CAGTAGTGAT GATAACGCCA AGGCGGGTGA GAAAGTCACT
CCGCTTAAGG AACCACAATG GCACTGCGAT ACCCATTATC AGGCTTGGGG CCAACATCAT
CAGGGAGCAA AATAA
|
|---|
| Protein sequence | MQINNKIIIS CGIISSFVSH NIFAEANPIS PVNKLTAFTN AELIMAPGKR LTNATLLVEN
NRIKAIIEKG DIPEAALKVD LSGYTIYPGF IDPFTDYGIE FEYPKLALTR PVYDIKRIGG
NAENGAIHAE KEWFNYVYPN KERARDWINN GFTSVQSSKL DGIFRGTGVS LSLADKTANE
VIYRARSQPF MAFDKGTSEQ DYPNSLMGSI ALIRQTFADA NWYNQNKHKS VNSSANPQIE
FNIAFERLDN LAEKQIVFET KNLNDLLRAA NLLKEHQQPA NLLASGQEYA RINELKALNY
PLILPLNYPQ ASDVGTDDAD REVSLAELRQ WERAPTNPAA VANVDIPFAF TQFGIKTEAF
WPRLRQAIAQ GLSEDKALAA LTTQAAEMTG TAEFAGKLAP GYMADFVITK GNIFKDGQIY
SVWLQGEEQS IRSLPQAKLL GDYQLTLNNL TLDLSLEETG KAGKTAFQGQ LSSGEKSITL
TNLQLEDDGR VSFNADLSDA GIHGISRFTL WLAKDGIQGR MVDAKSRSIN VAGIAIASSL
KTEQESTPKT DAAATLVSQL TYPNVAYGLS EAPKAEKLHI KNATLWTSDK QGILEHADLL
MANGRIEKIG QQLSTPSGYQ VLDATGKHLT AGIVDEHSHI AINGGTNEGT DAVTSEVRIG
DVINPEDISI YRALAGGVTS AQLLHGSANP IGGQSQLIKM KWGESAEQLK FANAPASIKF
ALGENVKQSN WGEKFVQRFP QTRMGVKALF EETFDAAITY EKALKDYDDL RSSEKKKTIS
PRPSYRLQAV AEVLKQQRDV HIHSYVQSEI LMFLRLAEAY HFKVQTFTHV LEGYKVASEL
AAHGAGASTF ADWWAYKFEV YDAIPQNACL MQKQGVLTSI NSDDYEMQRR LNQEAAKSMM
YCDMSKEDAW NMVTINPAKQ LRVDEYVGSL TPGKMADIVL WNAEPLSIYA KVTQAWVEGK
RYFDRDQDQL AQQQVMAERA ALIQKILSSD DNAKAGEKVT PLKEPQWHCD THYQAWGQHH
QGAK
|
|---|
| |