| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0581 |
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| Symbol | |
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| ID | 4254946 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-7 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008322 |
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| Strand | - |
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| Start bp | 682252 |
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| End bp | 684231 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638121195 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_736641 |
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| Protein GI | 114046091 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTA AGTTACGGCG ATTCATCGAC ATATTGCGGC AACAATCCCG TTCTACCGTC
GCTAAGGTAT TGTTGATTAT TAGTATGTTT ATTACGATCT GTATCGCATT GGTCGCACTC
GTCTATATCC AGGGCAATAT TTTCGATGGG GTTCGCACCT ATGTCAGAGG CGAAGGGCTT
TGGGCTAAGG CGCAAAAGGA TGCCACTTTT TACCTTATTC AGTATTCCTA CAATAAAAAT
GAAGTGGATT ATCAACGCTT TTTGGCAGCA ACGGCCGTGA TGCAAGGGGA CAAACAAGCA
CGTGAAGCCC TACTCTCCTC ACCGATTAAC GAGCTAAAAG CCAAAGAAGG CTTTATTCAG
GGATTAAATG ATGAAAGGGA CACTGAGTCC TTAATCTGGT TTTTCCGTCA TTTTAATCGT
ACTCACTATA TGCAGCAGGC CATCAAGGTT TGGGCTTTGG CCGATGATAA ATTCAGCACG
ATAATGTCGC TCGCCAACGA CATGCACAGC GACATAACTC GCTCAGGCAA CGAAGCGGAA
AACCTCAGCG AATATCGACA ACAAATCATC AAACTGAGCG AAGAATTACT CGGCTTAGAA
ATTGAATTTT CCTCAATTCT TAGTGAAGCC GCCCGTTGGG TAAAAAGGGT CACTTGGTTT
ATCAGCCTAG GAGCGCTATT GCTGTTTATC AGCATAGGCG TGTTTGCCAG CAGGCAGATT
ATTCGCAATA TAGCTAAATC TGAAAAACTA TTACTTATCA GTGAGTCACG GTTTAATAGT
CTTAAAAACT CCGACACCAT AGGCATTATT TCATGGCAAA TTGATGGCAC CATACACGAT
GCCAACGATC ATTTTCTCAA TATGTTGGGC TTTGATCGTG AGGATCTCAA CTCGGGCCTT
ATCAATTGGC GTGCACTCAC ACCATCAGAG TTTGAGGCCA GAGATAAAAT GGCGATTGCC
GAACTCCTTG AGTTTGGGCA TTGCAATCAA TATGAAAAAC AACTCGTTAG CAAAGCGGGA
ACACATATTC CCGTGATGTT AGGCGCAAGT TTCTTAAATA GCAGCACCCA AGAAGGGGTT
GCCTATTTTA TGGATCTGAC CAGCAGCAAG CAGGCCGAAG ATAAACTCAG GCTCGCCGCA
ACCGTATTTA ACGCCAGCAC AGATGGCATC ATAATCACAG ATCCGCTATT AAACATTATC
TCTATCAATC AAGCTTTTAC CGATATAACC GACTTAACCG AGCAGAACTT ACACCAAGAT
GCTTCGCGCT TTATCAATAC GGGTCATCAG AGCGAAGATG CTTATCAAGC CATGTGCAAC
CTACTACAAC AGGGGGAGCA ATGGCAGGGT GAACTCATTA AAGAAACCGC CTCAGGGTAC
CTAACCCTTA GCGTTCGCAT CAACACAGTA CACAATGAGC ATAACCAACT GACTCACCTC
GTGATTGTCA TAACCGATAT TTCTGAGCGT AAAGCCGAAG AAGAACATTT ACGCCATATC
GCCCACCACG ACGCGCTCAC CAACCTCCCT AATCGGGTGT TGTTCCATAC CAAATTAGAA
CAAGCAATCG TCCATGCGCA GCGATCCGAT GGGATCTTTG CCATTCTGTT TCTCGACTTA
GATAACTTCA AACCAGTCAA CGATGAATAT GGCCACGATG TCGGCGATAA ATTATTGCAG
GAAGTGGCCA AAAGACTCAT GGGCAGCATT CGGCAAATCG ATACCATTAC CCGCCTAGGT
GGCGACGAGT TTGTGATTTT GCTGGAACAC TTACCCAATG AAGAGAGCGT GCCCGCCCTG
ATCCACAAAA TAACTCTAGC ATTAACATCG CCTTATACTA TCCACGAACA AGTGTTGCGC
ATTGGAGTGA GCATAGGTGC GGCGATTTAC CCCTGCCATG GCACCGACGC TAAGAGCCTA
ATCAACTCTG CAGATCAAGC CATGTATGCG GTCAAAAAAG CCAACAAACA GCTGCAATAA
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| Protein sequence | MSSKLRRFID ILRQQSRSTV AKVLLIISMF ITICIALVAL VYIQGNIFDG VRTYVRGEGL
WAKAQKDATF YLIQYSYNKN EVDYQRFLAA TAVMQGDKQA REALLSSPIN ELKAKEGFIQ
GLNDERDTES LIWFFRHFNR THYMQQAIKV WALADDKFST IMSLANDMHS DITRSGNEAE
NLSEYRQQII KLSEELLGLE IEFSSILSEA ARWVKRVTWF ISLGALLLFI SIGVFASRQI
IRNIAKSEKL LLISESRFNS LKNSDTIGII SWQIDGTIHD ANDHFLNMLG FDREDLNSGL
INWRALTPSE FEARDKMAIA ELLEFGHCNQ YEKQLVSKAG THIPVMLGAS FLNSSTQEGV
AYFMDLTSSK QAEDKLRLAA TVFNASTDGI IITDPLLNII SINQAFTDIT DLTEQNLHQD
ASRFINTGHQ SEDAYQAMCN LLQQGEQWQG ELIKETASGY LTLSVRINTV HNEHNQLTHL
VIVITDISER KAEEEHLRHI AHHDALTNLP NRVLFHTKLE QAIVHAQRSD GIFAILFLDL
DNFKPVNDEY GHDVGDKLLQ EVAKRLMGSI RQIDTITRLG GDEFVILLEH LPNEESVPAL
IHKITLALTS PYTIHEQVLR IGVSIGAAIY PCHGTDAKSL INSADQAMYA VKKANKQLQ
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