| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr7_0580 |
|---|
| Symbol | |
|---|
| ID | 4258015 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-7 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008322 |
|---|
| Strand | - |
|---|
| Start bp | 681573 |
|---|
| End bp | 682166 |
|---|
| Gene Length | 594 bp |
|---|
| Protein Length | 197 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 638121194 |
|---|
| Product | cold-shock DNA-binding protein family protein |
|---|
| Protein accession | YP_736640 |
|---|
| Protein GI | 114046090 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1278] Cold shock proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAAGAG GCATTTTAGT TCGTTGGAAC GATGAGAAAG GATTCGGGTT TATTCAACCA
GAAGATTCAA AGGGTAAAGA CGTTTTTATC CATATTACCG TGCTTAAGCA CATGGCCAGA
AAACCTCTGG TCGGCGATAG TATTTTGTAT CGAACCGAAA TACAAAACGA TGGCAAAGTG
AAGGCCATCA AGGCTTCTAT CGAAGGCGTC GCCGTGTTAG CAAACACCCA TAAAAGTCAG
CGCCGAAATG TTAATCCACC AAATCGCTCC CTATCAAATA CCCTGCTACC GCTGTTATTA
ATCTTGGGTA TTGGGATATT TGGTTTTAAG AAATATACCG AGTTCGATAT TGCTCAGGCG
CCAAATAACA CAGAGATTGA GACAACGCCC CTGTATCAGC CTCAAACTCA GTCTCAGTCT
CAGTCTCAGT CAGCACCTCA GGCTCAGTTT CGCTGCGAGG CTGGTAAAAC CCATTGCAGC
CATATGAGCT CCTGCGCCGA AGCGACGTTT TACATCAATC ATTGCCCAAA TACCCAAATG
GATGGCGATG GTGACGGCAT CCCCTGCGAG CGCCAGTGGT GTAATGGCTA TTAA
|
|---|
| Protein sequence | MERGILVRWN DEKGFGFIQP EDSKGKDVFI HITVLKHMAR KPLVGDSILY RTEIQNDGKV
KAIKASIEGV AVLANTHKSQ RRNVNPPNRS LSNTLLPLLL ILGIGIFGFK KYTEFDIAQA
PNNTEIETTP LYQPQTQSQS QSQSAPQAQF RCEAGKTHCS HMSSCAEATF YINHCPNTQM
DGDGDGIPCE RQWCNGY
|
|---|
| |