Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0517 |
Symbol | |
ID | 4258321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 593343 |
End bp | 594401 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 638121131 |
Product | secretion protein HlyD family protein |
Protein accession | YP_736577 |
Protein GI | 114046027 |
COG category | [V] Defense mechanisms |
COG ID | [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.148603 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACCGG ATCAACAATT TGCCCGCCTT GTGAAAATCG CCATGCTCGG TTTTGTGGCC GTGTTTGGCT ATTTTATGTT TGCCGACGCT ATGATGCCCT TGACCCCACA GGCCATGGCA ACCCGTGTGG TGACTAAGGT GACTCCGCAG ATCAGCGGCA AGATTCAAAC CATTAATGTG AAGAATAACC AAGTGGTCGC TAAGGGCGAT TTATTGTTTC AAGTCGACCC TGCGCCCTTT GAGTTAGCCG TGTCTCAGGC CAAATTGGCC CTAGAGCAAG TGCGTCAGGA CAATGCTGAA TTAGATGCTT CGTTGTTGGC GGCCAAGGCC GAAGTGAATG CCAGCTCGAC TACGGCACAA CAAAAACGCC GTGAGGCTAA ACGTTTAGAT GCGCTGTATG CCACCCATGG TGTATCACAG CAGCAACGTG ATCAGGCCGA TAGCGACGCG GCCGCCGCCG AGGCGAATCT GTTAGCCGCC AATGCTCGCC TCGAAAAACT CAAAGTGAGC CGTGGTCTCT ATGGTGAAGA TAACCTCAGA ATGCGCCAAG CAAGAAACGC ATTGGAGCAG GCCGAGTTGA ATTTATCCTA TACCCAAATT CACGCCGACC AGGATGGTGT AGTGACTAAC CTGCAGCTTG AGGTCGGTAG TTTTGCCTCT GTGGGTCAGC CATTACTCGC CTTAGTCTCT GATAAGTTAG ATATTATTGC CGATTTCCGT GAAAAAACCT TAAGGGGGGT TAACGCATCT TACCCTGCAT TAATCGCCTT CGACGGTGAA CCAGGCCGTT TATACCGCGC CCAAGTGAGC AGTGTCGACG CCGGTGTGAG TGCGGGGCAG TTTGATGCCA ATGGCCGCTT AGCGGCGCCG CAGGAGTCGG ACCGCTGGGT GCGTGATGCG CAGCGCTTAA GACTGCATTT AGTCTTAGAT GACGATGCCA TGAATGGCTT GCCAGCAGGT GCGCGTGCCA CAGTGCAATT ACTGCCCGAC AATGCGCTGT TTAGCCTGCT AGCCAAGGTG CAGATTAAGG TCATTAGCCT GCTCCATTAC ATCTATTAA
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Protein sequence | MTPDQQFARL VKIAMLGFVA VFGYFMFADA MMPLTPQAMA TRVVTKVTPQ ISGKIQTINV KNNQVVAKGD LLFQVDPAPF ELAVSQAKLA LEQVRQDNAE LDASLLAAKA EVNASSTTAQ QKRREAKRLD ALYATHGVSQ QQRDQADSDA AAAEANLLAA NARLEKLKVS RGLYGEDNLR MRQARNALEQ AELNLSYTQI HADQDGVVTN LQLEVGSFAS VGQPLLALVS DKLDIIADFR EKTLRGVNAS YPALIAFDGE PGRLYRAQVS SVDAGVSAGQ FDANGRLAAP QESDRWVRDA QRLRLHLVLD DDAMNGLPAG ARATVQLLPD NALFSLLAKV QIKVISLLHY IY
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