Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr7_0153 |
Symbol | |
ID | 4257069 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-7 |
Kingdom | Bacteria |
Replicon accession | NC_008322 |
Strand | + |
Start bp | 176919 |
End bp | 178142 |
Gene Length | 1224 bp |
Protein Length | 407 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638120749 |
Product | general secretion pathway protein F |
Protein accession | YP_736216 |
Protein GI | 114045666 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
| ![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_cp.jpg)
![](https://exploration.weizmann.ac.il/pandatox/images_new/ic_hh.jpg)
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCAGCAT TTGAATATAA GGCGCTGGAC GCCAAGGGAA AACAGCTAAA AGGGGTGATT GAGGCAGATA CCGCCAGACA CGCCCGTAGT CAGCTGCGCG ATCAACGCAT GATGCCGCTG GAAATTTTGC CGGTCACCGA AAAGGAAGCC AAGGCAAAAG GTACGGGATT CTCGCCCTTT AAACGCGGGA TTTCGGTGGC GGAATTAGCG TTGATCACCC GTCAAATCGC CACACTGGTT GCGGCGGGCT TACCGATTGA GGAGTGTCTC AAGGCGGTGG GCCAGCAATG TGAGAAGGCG CGCCTAGCCA GTATGATCAT GGCGGTGCGC TCCCGCGTGG TGGAAGGCTA TAGTCTGGCC GACTCTCTTG CTGAATTTCC GCATATTTTC GATGACTTAT ACCGCGCCAT GGTGGCCTCG GGTGAAAAAT CCGGTCACTT GGAAGTGGTG CTTAACCGCT TAGCCGATTA CACCGAGCGC CGTCAGCAGC TGAAGTCCAA ACTGCAACAG GCGATGATTT ACCCCATTAT GCTGACCATT GTGGCCATTG GTGTAGTGTC AGTGTTGTTG GCGGCTGTGG TACCAAAGGT GGTGGGGCAA TTTGAACATA TGGGCGCCGA GTTACCCGCA ACGACCCGTT TCTTAATTGC CGCCTCTGAC TTTGTGCAAA GCTATGGCCT ACTCGTGGTA TTGATTATTG GTATTTTGCT GGTGGTGTTT CAGCGTTTAC TTAAGTCACC GATTTTCAAG ATGAAATACC ATACATTTTT GCTGAAAATG CCGGTGGTTG GCCGTGTGAG TAAAGGGCTT AATACCGCGC GATTTGCGCG AACTCTGAGT ATTTTATCTG CCAGTTCGGT GCCTTTGTTA GATGGGATGC GCATTGCCAG CGAAGTATTG CAAAATGTGC GGGTGCGGGC GGCGGTAGAT GATGCTACGG CGCGCGTACG GGAAGGAACT AGCCTAAGCA CTGCGTTGAC TAACACTAAG CTGTTCCCGG CGATGATGTT ATATATGATC GCCTCGGGGG AGAAGAGTGG TCAGCTCGAA GACATGCTTG AGCGCGCAGC TGATAACCAG GATAGGGAGT TCGAGAGTAA TGTTACACTT GCCCTCGGGG TTTTCGAGCC GGCATTGGTG GTGAGCATGG CGGGGGTTGT ACTCTTTATC GTGATGGCCA TTCTGCAACC TATCTTGGCA CTGAACAATT TGATTAGTGG CTAG
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Protein sequence | MPAFEYKALD AKGKQLKGVI EADTARHARS QLRDQRMMPL EILPVTEKEA KAKGTGFSPF KRGISVAELA LITRQIATLV AAGLPIEECL KAVGQQCEKA RLASMIMAVR SRVVEGYSLA DSLAEFPHIF DDLYRAMVAS GEKSGHLEVV LNRLADYTER RQQLKSKLQQ AMIYPIMLTI VAIGVVSVLL AAVVPKVVGQ FEHMGAELPA TTRFLIAASD FVQSYGLLVV LIIGILLVVF QRLLKSPIFK MKYHTFLLKM PVVGRVSKGL NTARFARTLS ILSASSVPLL DGMRIASEVL QNVRVRAAVD DATARVREGT SLSTALTNTK LFPAMMLYMI ASGEKSGQLE DMLERAADNQ DREFESNVTL ALGVFEPALV VSMAGVVLFI VMAILQPILA LNNLISG
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