Gene Shewmr4_3907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3907 
Symbol 
ID4254470 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp4660268 
End bp4660891 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content47% 
IMG OID638120552 
Productcytochrome c, class I 
Protein accessionYP_736027 
Protein GI113972234 
COG category[C] Energy production and conversion 
COG ID[COG2863] Cytochrome c553 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.0045605 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.272938 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAGT TAGCTCTTGC GCTGTCTGTT GTAGTTGCCG CCATATCTTC ACCTGCGATT 
GCTGAAGGTA ATGCTGAAGC GGGAAAAACT AAAGTTATCG TTTGTTCTGC CTGTCACGGC 
ATGGACGGTA ACAGTATGAT CGATATGTAC CCTAAGCTTG CGGGCCAACA CGCCACATAC 
CTCCAAAAGC AACTACATGA TTTCCGTAGT GCTGCACAAT CTGGCGGTAA AGATGGTCGT 
ATGGATCCTA TCATGAGTGG TATGGCAATG CCTCTAAGCG ATCAAGATAT TCTGGATATC 
AGCGCTTATT TCTCTAGCCA AGCAATTCAA GTTGCTGAGG CGAAAGATGT TCCTGAGCTA 
GGTGCAAAAC TTTACAAAGG TGGCGACGTG TCACGCGGCA TCACTGCATG TATGGCATGT 
CATGGCCCAG ATGCTAAAGG TGCAGAGTCT GCTGGCTTCC CTGCATTAGC CGGCCAACAC 
GCTAACTACA TCAAGATCCA ACTGACTAAG TTCCGCGATG CTGGCCGTCA CAACGACCTC 
AATGGCATGA TGCAAGATGT CGCGAAAAAG TTAAGCGACA GTGATATCGA AGCCTTATCT 
AAGTATATCG CTAGCCTGAA ATAG
 
Protein sequence
MKKLALALSV VVAAISSPAI AEGNAEAGKT KVIVCSACHG MDGNSMIDMY PKLAGQHATY 
LQKQLHDFRS AAQSGGKDGR MDPIMSGMAM PLSDQDILDI SAYFSSQAIQ VAEAKDVPEL 
GAKLYKGGDV SRGITACMAC HGPDAKGAES AGFPALAGQH ANYIKIQLTK FRDAGRHNDL 
NGMMQDVAKK LSDSDIEALS KYIASLK