| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3684 |
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| Symbol | |
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| ID | 4254247 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4401484 |
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| End bp | 4403367 |
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| Gene Length | 1884 bp |
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| Protein Length | 627 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638120326 |
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| Product | LppC family lipoprotein |
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| Protein accession | YP_735804 |
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| Protein GI | 113972011 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTTAAAAA GCCTGAATAC AACTAAGTTC GTTTCCGTGG CCATTTTATC CGCAGTGTTG
GCGGGTTGCG GCAGCCAAAC GCCCAGCTCA ACCGGTACTG CTCCCACAGT GGCCACCTCT
TTAGCCTCTG CCCCATTGGC GCCCAATGTG TATTTAGCAC AGGCAGCGAA TAGCAAAGAT
CCACAGCAAC GCGACACTAA CCTGTTGCTG GCGGCACATG CCTATATCAA TGCCAATGAC
TATGCAGCGG CACAGAAACT GTTGAAGTCG ATGCTACCAA GCCTGACCCA GACTCCAACG
CTAGTGGCCG AACATAAATA CCTGACGGCA CGGGTGTTAG AGCATACATC GACCTATGTC
GAGGCGCTCA AGACTCTGAG CTATCCAAGC ACTTGGGTTT TACCCGGCTG GCAAATGGCT
GCGTATCATC AATTTAGAGC GCATTTGTTC CAACTGAATA AGCAACCTAT CGAACAAGTG
CGCGAGCTGA GTTTATTGAC CACCTATTTA CCGCCCGCCG AGGCGAGTGA AGTCAATAAC
CAAATCTGGC AAGTGTTGCA GCCAATGCAT GAGCAAACCC TGCAAACCTT TATCCGCGAT
GCCAACAACC CAGTATTTGC TGGTTGGTTG CAGCTCGCCT ATATCGCCAA ACATTATGCG
GTCGACCCCA ATCAACTGGT TCGCTACTTA GGCGACTGGC AAAAGCAGAA TCCTTATCAT
CCAGCGGCGG CGAAATTACC GACCGATTTG GATCGGGCGC TCAATGCCAA GCCTTTTATG
CCGAAGAATA TAGCCGTCTT GTTGCCGCTC ACAGGTCAAC GCGCCAGCGC GGCCAACGCG
ATTCGCCAAG GGATTTTAGC CAGCTATTTA GCCAAACCCA ATGAGCAGGT TGCGGTTAAT
TTTTACGATA CGGCCAATGA TGCCGTCGCC GCATATCAGC AAGCGGTAAA CGCAGGTGCC
GAGTTTATTA TTGGCCCCTT GCTGCCAAAT GAAATCGATC AATTACTCTC GCTGAATAAC
ACAAGCCCTT CAACGAGCAC GTCAACAGGA ACAGCACCCG CTGCGCCTAT CGCTCCCACC
GCAGCTATCC CGCAGCTGTT TTTAAATCAA ACCGATAAGT TTGTGCCCGA TATCAATAAG
TTTTTCTTTG CGCTGTCACC AGCCCAAGAA GCTGCCGATG CCGCAACGCG CATGTATCAA
GATGGCGTGA CTATGCCATT ACTGCTCGCC AGCAACGATG CCACAGGCAA ACGCATGGCA
GAAAGCTTTA TCCAAGCCTG GAAAAAGAAA AGCGATACCC CTATCGAAGT CTATTACTAC
GATGGTGGCG ATAAAATGAA AACCACAGTG CAGGATGCAC TCGGTGTCCG TGATAGCCAA
GCGCGTATCG CGCGGATCAA GGAGCTGCTC GGTAATTCGG TACAGGCCGA TTTTCGTTCG
CGCCAAGATA TCGATGCGAT CTATATGATC TCGACGCCGC AGGATTTAAC CTTGCTCAAG
GCCTTTATCG ATGTGAACTT CAGCGTCTTT ACTCAGCCAG TGCCGCTGTA CACCTCAAGC
CGCAGCCGCA TCGACAACGA ATCGAGCCAA ACGGCGCAGG ATTTAAATAA CCTGACCATG
AGCGATGCAC CTTGGCTGAT GCAAAACAGT GAAGAAAACC TGATGGTTAA CACACTTTGG
TCGGGCTGGA ATAACGGCCA GAAACGCCTG TTCGTGATGG GCTATGATGC CATGGATTTG
ATCAGCAAAC TGGCGCAAAT GCGCTCATTC ACGGGTTACC AGTTCAATGG ACGTAGCGGC
GTATTATCCG TCAATCCTGA CGGCGTGATT AACCGCCAAT TAAGCTGGGG ACGCTATCAA
AGAGGCAGTT TCCGTCAACT ATGA
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| Protein sequence | MLKSLNTTKF VSVAILSAVL AGCGSQTPSS TGTAPTVATS LASAPLAPNV YLAQAANSKD
PQQRDTNLLL AAHAYINAND YAAAQKLLKS MLPSLTQTPT LVAEHKYLTA RVLEHTSTYV
EALKTLSYPS TWVLPGWQMA AYHQFRAHLF QLNKQPIEQV RELSLLTTYL PPAEASEVNN
QIWQVLQPMH EQTLQTFIRD ANNPVFAGWL QLAYIAKHYA VDPNQLVRYL GDWQKQNPYH
PAAAKLPTDL DRALNAKPFM PKNIAVLLPL TGQRASAANA IRQGILASYL AKPNEQVAVN
FYDTANDAVA AYQQAVNAGA EFIIGPLLPN EIDQLLSLNN TSPSTSTSTG TAPAAPIAPT
AAIPQLFLNQ TDKFVPDINK FFFALSPAQE AADAATRMYQ DGVTMPLLLA SNDATGKRMA
ESFIQAWKKK SDTPIEVYYY DGGDKMKTTV QDALGVRDSQ ARIARIKELL GNSVQADFRS
RQDIDAIYMI STPQDLTLLK AFIDVNFSVF TQPVPLYTSS RSRIDNESSQ TAQDLNNLTM
SDAPWLMQNS EENLMVNTLW SGWNNGQKRL FVMGYDAMDL ISKLAQMRSF TGYQFNGRSG
VLSVNPDGVI NRQLSWGRYQ RGSFRQL
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