Gene Shewmr4_3517 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_3517 
Symbol 
ID4254083 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand+ 
Start bp4206027 
End bp4206632 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content47% 
IMG OID638120155 
Producttwo component LuxR family transcriptional regulator 
Protein accessionYP_735640 
Protein GI113971847 
COG category[T] Signal transduction mechanisms 
COG ID[COG4566] Response regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.751217 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones31 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCACCA AGCTACAGTT GTACTTAGTC GATGATGATG AGGCGATTCT CGATTCTCTA 
GGGTTTATGC TCGGGCAATT TGGCTATCAA GTACAAACCT TTAGCAGTGG ACGGGATTTT 
TTAGCCCAAT GCCCCTTAAC GCAGGCGGGC TGCGTGATTT TAGATAGCAG AATGCCGGAG 
ATCACCGGCC AAGAAGTCCA GCAAAAATTG CTTGAGACCC AAAGCCCGCT GGGTGTGATC 
TTTCTAACGG GTCACGGCGA TTTACCTATG GCATTAAGCG CCTTCCGCAA AGGTGCCTGT 
GACTTTTTTC AAAAGCCCGT GTCCGGCAAA GCTTTGGTTC AAGCGATTGA AAAAGCGCAT 
AAAGAAAGCC AAGCCAGTTT TGAGCAACTG TATCTGCAGC AAAAATTTGC CCAACTGACT 
GAGCGCGAAC AACAAGTTTT AGCCCATGTG GTTCAAGGCA TGACCAATAA ACAGATCTCC 
GAAGCCATGT ATTTATCCTT AAGAACCATC GAAGTCCATC GCGCTAAGAT TATGAAAAAG 
CTCGAAGTTA GCAATATGGC CGAATTAGTC CAGCATTTAG CTCACCTCAA TGCCCTACTG 
CCTTAA
 
Protein sequence
MSTKLQLYLV DDDEAILDSL GFMLGQFGYQ VQTFSSGRDF LAQCPLTQAG CVILDSRMPE 
ITGQEVQQKL LETQSPLGVI FLTGHGDLPM ALSAFRKGAC DFFQKPVSGK ALVQAIEKAH 
KESQASFEQL YLQQKFAQLT EREQQVLAHV VQGMTNKQIS EAMYLSLRTI EVHRAKIMKK 
LEVSNMAELV QHLAHLNALL P