| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3421 |
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| Symbol | |
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| ID | 4253987 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4090039 |
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| End bp | 4092891 |
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| Gene Length | 2853 bp |
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| Protein Length | 950 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 638120059 |
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| Product | excinuclease ABC subunit A |
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| Protein accession | YP_735544 |
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| Protein GI | 113971751 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0178] Excinuclease ATPase subunit |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.00603968 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATAAGA TTGAAATACG CGGCGCACGG ACCCACAATC TCAAAAATAT CAACCTGACT
ATCCCAAGGG ATAAGTTAAT CGTTATCACA GGGTTATCGG GTTCAGGCAA ATCTTCCCTA
GCATTTGATA CCTTATATGC CGAAGGCCAA CGACGTTACG TTGAGTCTCT TTCTGCCTAT
GCCCGCCAAT TCTTAAGCTT GATGGAAAAG CCCGATGTCG ACCATATCGA AGGCTTGAGC
CCGGCAATTT CCATCGAACA AAAATCGACG TCCCATAACC CGCGCTCCAC CGTCGGGACT
ATTACCGAAA TTTACGACTA TCTGCGTCTG TTGTTTGCCC GTGTGGGCGA ACCGCGCTGC
CCGACACACG GCCAACCCCT TGCGGCGCAA ACCGTGAGTC AGATGGTCGA TAAAGTGTTA
GAAATGCCCG AAGACAGCCG CTTGATGCTG CTGGCGCCCG TAGTCAACGG TCGTAAGGGT
GAGCACGTTA AACTACTCGA AGGTTTATCG GCGCAGGGCT ATATCCGCGC CCGAATCGAT
GGCGAAGTCT GCGACTTAAC CGATCCACCA ACACTCGATT TACACGTTAA GCACACCATC
GAAGTGGTGG TCGACCGCTT TAAAGTCCGC AGCGATATCC AGCAGCGTCT CGCCGAATCC
TTTGAAACCG CGCTCGAACT CTCCGGCGGG ATTGCCGTGG TCGCCAGCAT GGATGAAGGC
AACACTGAAG AATTAATCTT CTCTGCAAAT TTTGCCTGTC CGCACTGCGG TTATTCAATG
GCAGAGCTTG AGCCACGGAT TTTCTCCTTT AACAACCCGG CGGGCGCTTG CCCGACCTGT
GATGGTTTAG GGGTACAACA GTTTTTCGAC CCCGACAGAG TGATCACTAA TCCTGAGTTA
TCCCTTGCGG GCGGCGCGAT TCGTGGCTGG GATAGACGTA ACTTCTATTA CTTTCAGATG
CTGAGTTCGC TCGCCGACCA CTATAAGTTC GATGTCGAAA TTCCCTTCGA ACAGCTGTCG
GATAAGGTGA GAAAAATCGT CCTCTACGGC TCAGGCAAAG ACAGCATCGC CTTCAAATAC
ATCAACGACC GTGGTGATGT GGTGGTGCGC ACTCACCCCT TCGAAGGCAT CTTAAATAAT
ATGGACCGGC GCTACCGCGA GACCGAAAGC AACGCGGTGC GCGAAGAATT AGCCAAGTTT
ATCAATACTC AAGCCTGCCA AAGCTGTGGC GGGTCGCGCT TGCGCGAAGA AGCCCGTAAC
GTGTTTATTG GCGATCTTAA CCTGCCAAAA CTCACCGTTT GGTCGATAGG TGAAGCCCTA
GACTACTTCG ACAAACTCGA GTTCAGCGGC CAAAAGGCAC AGATCGCCGA GAAGGTACTG
AAGGAAGTGC GCGATCGCTT AGGCTTCCTA GTTAACGTCG GCCTCAACTA TTTAAGTCTG
TCGCGTTCGG CCGAAACCCT CTCAGGCGGT GAAGCGCAGC GTATTCGTCT CGCCAGCCAA
ATCGGCGCAG GACTCGTCGG CGTGATGTAT GTGCTTGACG AGCCTTCTAT CGGCTTGCAC
CAGCGAGATA ACGAACGGTT ATTGCAGACC TTAATCCACC TGCGGGATTT AGGTAATACA
GTGATCGTAG TGGAGCATGA TGAAGATGCG ATTCGTATCG CGGATCATAT TATCGATATC
GGCCCAGGCG CTGGGGTACA CGGCGGCGAA GTGATTTGCG ACGGCCCAAT TGAGAAAATT
GTCGCCTGCG ACGAGTCCGT GACTGGCCAA TATATTTCGG GCAAACGCAA TATCCATATC
AGCACTCCAC GTACGCCTTA CGATCCAAAA CAAGTGATTG AGCTTTACGG CGCCCGCGGC
AATAACCTGC GCAATGTCGA CTTAACGGTT CCCGTAGGCC TGTTCACCTG CGTGACCGGG
GTATCGGGTT CGGGTAAATC GACGCTGATT AACGACACCT TCTTTAGAAT TGCCCATAAG
CAACTCAACG GTGCCACAGT CGATGAGCCT GCACCTTACG ATCGCATCGT CGGCATGGAG
CAATGCGATA AAGTGGTCGA TATCGACCAA AGCCCAATTG GCCGCACGCC GCGCTCCAAC
CCTGCCACTT ATACCGGTAT CTTTACGCCT ATTCGGGAGA TTTTTGCTGG AACGCAGGAG
TCCCGTACCC GTGGTTATCA AGTGGGCCGT TTCTCCTTTA ACGTGAAAGG CGGTCGCTGT
GAGGCCTGCC AAGGTGATGG CTTAATTAAG GTCGAAATGC ACTTCCTGCC CGATGTGTAT
GTGCCTTGCG ATGCCTGTAA GGGTAAACGC TATAACCGCG AAACCTTAGA GGTGCGCTAC
AAGGGTAAGA ACATCCACGA AGTGCTGCAA ATGACAGTGG AAGATGCGCG GGAGTTTTTC
GATGCCGTGC CAGCCATTGC CCGTAAACTG CAAACCCTGA TGGATGTGGG TTTGTCCTAC
GTACGTTTAG GCCAGAGCGC GACCACGCTG TCGGGCGGTG AAGCCCAAAG GGTGAAACTC
GCGAAGGAAC TCTCTAAGCG CGATACGGGT AAGACCTTGT ATATTCTGGA TGAACCGACA
ACGGGCTTGC ACTTTGCCGA TATCCAATTG CTGCTCGATG TGCTGCATCG CCTCAAATCC
CATGGCAATA CTATCGTGGT GATTGAGCAT AATCTGGATG TGATTAAAAC CGCAGACTGG
ATTATCGACT TAGGTCCAGA AGGCGGCGGT GGCGGCGGCA CTATCCTAGC AACTGGTACG
CCAGAAGAGG TGGCAGAGCA TCCAACGTCC CATACCGCGC GCTTCCTAAA GCCGCTGCTG
GAAAGGGATG CTAAGCTAGC CAAACAGTCA TAA
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| Protein sequence | MDKIEIRGAR THNLKNINLT IPRDKLIVIT GLSGSGKSSL AFDTLYAEGQ RRYVESLSAY
ARQFLSLMEK PDVDHIEGLS PAISIEQKST SHNPRSTVGT ITEIYDYLRL LFARVGEPRC
PTHGQPLAAQ TVSQMVDKVL EMPEDSRLML LAPVVNGRKG EHVKLLEGLS AQGYIRARID
GEVCDLTDPP TLDLHVKHTI EVVVDRFKVR SDIQQRLAES FETALELSGG IAVVASMDEG
NTEELIFSAN FACPHCGYSM AELEPRIFSF NNPAGACPTC DGLGVQQFFD PDRVITNPEL
SLAGGAIRGW DRRNFYYFQM LSSLADHYKF DVEIPFEQLS DKVRKIVLYG SGKDSIAFKY
INDRGDVVVR THPFEGILNN MDRRYRETES NAVREELAKF INTQACQSCG GSRLREEARN
VFIGDLNLPK LTVWSIGEAL DYFDKLEFSG QKAQIAEKVL KEVRDRLGFL VNVGLNYLSL
SRSAETLSGG EAQRIRLASQ IGAGLVGVMY VLDEPSIGLH QRDNERLLQT LIHLRDLGNT
VIVVEHDEDA IRIADHIIDI GPGAGVHGGE VICDGPIEKI VACDESVTGQ YISGKRNIHI
STPRTPYDPK QVIELYGARG NNLRNVDLTV PVGLFTCVTG VSGSGKSTLI NDTFFRIAHK
QLNGATVDEP APYDRIVGME QCDKVVDIDQ SPIGRTPRSN PATYTGIFTP IREIFAGTQE
SRTRGYQVGR FSFNVKGGRC EACQGDGLIK VEMHFLPDVY VPCDACKGKR YNRETLEVRY
KGKNIHEVLQ MTVEDAREFF DAVPAIARKL QTLMDVGLSY VRLGQSATTL SGGEAQRVKL
AKELSKRDTG KTLYILDEPT TGLHFADIQL LLDVLHRLKS HGNTIVVIEH NLDVIKTADW
IIDLGPEGGG GGGTILATGT PEEVAEHPTS HTARFLKPLL ERDAKLAKQS
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