| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3372 |
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| Symbol | |
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| ID | 4253938 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 4020260 |
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| End bp | 4022239 |
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| Gene Length | 1980 bp |
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| Protein Length | 659 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 638120010 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_735495 |
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| Protein GI | 113971702 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 29 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAGTA AGTTACGACG ATTCATCGAC ATATTGCGGC AACAATCCCG TTCTACCGTC
GCTAAGGTAT TGTTGATTAT TAGTATGTTT ATCACGATCT GTATCGCATT GGTCGCACTC
GTCTATATCC AGGGCAATAT TTTCGATGGG GTTCGCACCT ATGTCAGAGG CGAAGGGCTT
TGGGCTAAGG CGCAAAAGGA TGCCACTTTT TACCTTATTC AGTATTCCTA CAATAAAAAT
GAAGTGGATT ATCAACGCTT TTTGGCAGCA ACGGCCGTGA TGCAAGGGGA CAAACAAGCA
CGTGAAGCCC TACTCCCCTC ACCGATTAAC GAGCTAAAAG CCAAAGAAGG CTTTATTCAG
GGATTAAATG ATGAAAGGGA CACTGAGTCC TTAATCTGGT TTTTCCGTCA TTTTAATCGT
ACTCACTATA TGCAGCAGGC CATCAAGGTT TGGGCTTTGG CCGATGATAA ATTCAGCACG
ATAATGTCGC TCGCCAACGA CATGCACAGC GACATAACTC GCTCAGGCAA CGAAGCGGAA
AACCTCAGCG AATATCGAGA ACAAATCATC AAACTGAGCG AAGAATTACT CGGCTTAGAA
ATTGAATTTT CCTCAATTCT TAGTGAAGCC GCCCGTTGGG TAAAAAGGGT CACTTGGTTT
ATCAGCCTAG GAGCGCTATT GCTGTTTATC AGCATAGGCG TGTTTGCCAG CAGGCAGATT
ATTCGCAATA TAGCTAAATC TGAAAAACTA TTACTTATCA GTGAGTCACG GTTTAATAGT
CTTAAAAACT CCGACACCAT AGGCATTATT TCATGGCAAA TTGATGGCAC CATACACGAT
GCCAACGATC ATTTTCTCAA TATGTTGGGC TTTGATCGTG AGGATCTCAA CTCGGGCCTT
ATCAATTGGC GTGCACTCAC ACCATCAGAG TTTGAGGCCA GAGATAAAAT GGCGATTGCC
GAACTCCTTG AGTTTGGGCA TTGCAATCAA TATGAAAAAC AACTCGTTAG CAAAGCAGGA
ACACATATTC CCGTGATGTT AGGCGCAAGT TTCTTAAATA GCAGCACCCA AGAAGGGGTT
GCCTATTTTA TGGATCTGAC CAGCAGCAAG CAGGCCGAAG ATAAACTCAG GCTCGCCGCA
ACCGTATTTA ACGCCAGCAC AGATGGCATC ATAATCACAG ATCCGCTATT AAACATTATC
TTTATCAATC AAGCTTTTAC CGATATAACC GACTTAACCG AGCAGGACTT ACACCAAGAT
GCTTCGCGCT TTATCAATAC GGGGCATCAG AGCGAAGATG CTTATCAAGC CATGTGCAAC
CTACTACAAC AGGGGGAGCA ATGGCAGGGC GAACTCATTA AAGAAACCGC CTCAGGGTAC
CTAACCCTTA GCGTGCGCAT CAACACAGTA CACAATGAGC ATAACCAACT GACTCACTTC
GTGATTGTCA TAACCGATAT TTCTGAGCGT AAAGCCGAAG AAGAACATTT ACGCCATATC
GCCCACCACG ACGCGCTCAC CAACCTCCCT AATCGGGTGT TATTCCATAC CAAATTAGAA
CAAGCAATCG TCCATGCCCA GCGATCCGAT GGGATCTTTG CCATTCTGTT TCTCGACTTA
GATAACTTCA AACCAGTCAA CGATGAATAT GGCCACGATG TCGGCGATAA ATTATTGCAG
GAAGTGGCCA AAAGACTCAT GGGCAGCATT CGGCAAATCG ATACCATTAC CCGCCTAGGT
GGCGACGAGT TTGTGATTTT GCTGGAGCAC TTACCCAATG AAGAGAGCGT GCCCGCCCTG
ATCCACAAAA TAACTCTGGC ATTAACAGCA CCTTATACTA TCCACGAACA AGTATTGCGC
ATTGGAGTGA GCATAGGTGC GGCGATTTAC CCCTGCCATG GCACCGACGC TAAGAGCCTA
ATCAACTATG CAGATCAAGC CATGTATGCG GTAAAAAAAG CCAACAAACA GCTGCAATAA
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| Protein sequence | MSSKLRRFID ILRQQSRSTV AKVLLIISMF ITICIALVAL VYIQGNIFDG VRTYVRGEGL
WAKAQKDATF YLIQYSYNKN EVDYQRFLAA TAVMQGDKQA REALLPSPIN ELKAKEGFIQ
GLNDERDTES LIWFFRHFNR THYMQQAIKV WALADDKFST IMSLANDMHS DITRSGNEAE
NLSEYREQII KLSEELLGLE IEFSSILSEA ARWVKRVTWF ISLGALLLFI SIGVFASRQI
IRNIAKSEKL LLISESRFNS LKNSDTIGII SWQIDGTIHD ANDHFLNMLG FDREDLNSGL
INWRALTPSE FEARDKMAIA ELLEFGHCNQ YEKQLVSKAG THIPVMLGAS FLNSSTQEGV
AYFMDLTSSK QAEDKLRLAA TVFNASTDGI IITDPLLNII FINQAFTDIT DLTEQDLHQD
ASRFINTGHQ SEDAYQAMCN LLQQGEQWQG ELIKETASGY LTLSVRINTV HNEHNQLTHF
VIVITDISER KAEEEHLRHI AHHDALTNLP NRVLFHTKLE QAIVHAQRSD GIFAILFLDL
DNFKPVNDEY GHDVGDKLLQ EVAKRLMGSI RQIDTITRLG GDEFVILLEH LPNEESVPAL
IHKITLALTA PYTIHEQVLR IGVSIGAAIY PCHGTDAKSL INYADQAMYA VKKANKQLQ
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