Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_3318 |
Symbol | |
ID | 4253884 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | + |
Start bp | 3960502 |
End bp | 3962664 |
Gene Length | 2163 bp |
Protein Length | 720 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 638119956 |
Product | TonB-dependent receptor |
Protein accession | YP_735441 |
Protein GI | 113971648 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4771] Outer membrane receptor for ferrienterochelin and colicins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.000715438 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGCCTA CTTACCTTGC CATCCTGTTA GCAGCCCTAC TACATCCCCC CTTGGCCAGC GCAGACGAAG TGAACCAACC TGAACTGGAT AAAATCGAGC GCGTGAGTGT TGTCGGCGTA AGACAACGAT TAGAGCAAGC CGGAACCTTG GCTAACACTA TCATGAAAAC CGAAGTCATC GACGCCAGCG TGATTGAGAA CAAAAATGCC GTTAACCTCT CCGAGGCGAT TGATAATTCC CCCGGCGTCA AAGTCTCCAA CGAATGCTCT ATGTGTGGGG TTAAGCGGAT TATGCTCAAC GGCATGAAAG GTGAGCAAAC CACGATTTTG GTCGATGGTT TACCCGTACA CACCATGATC TCGGGCTATT ATGCGGTCGA TGCCATTCCA ACAACTGGGG TGGAACGGAT TGAAGTTGCC CGTGGTGCGG GCGCATCCTT AATTGCCCCC GAAGCCATTG GCGGCACCAT TAATATTGTC AGCTACGAGC CCACAGAAAA CGGCGCAGAG TTGGATATCT CCGCCGGTGA AAATGGCTAC CGTAAACTGG GTTTTCTCGG TAAAGGCGTG ACCCAAGATG GCCGCACCCG CGCGACACTC GTTGCCCAAT ATGATGATAG AGATCAAGCC GATGCGGACA ATAACAAAGT CAACGAAGCA CCGATGCAGG AAAACCGCAG CCTGACCGCT CGAGTCTCCC ACGATGTGAC CGATACCGAT AACTTAGTGA TGCGCGTCGC CAATATTCAA TCGGAAATTT TCGGTGGCCC TATGTTAGGC AGCACCTTTG CCGATGGCGT CGCTTCTAGT ACGGGGAACG TGTTATCCGG CTACGATGGT CAGTCGAGCG AGCCACAACA GCTGTTTGAA GATGGTGATG TGCGTAAGCG CTACACAGGA AAAGCCTGGG AAACCACCGA ATGGATTAAA ACCCAGCGTA ACGAGGCCTC ACTCGCTTGG CTGAGGGAAT TTAACGACAA CTGGAACATG CACCTTACCG CCAGTTACGC CGACCATAAG CAGGACTCCT TCTATGAAGG CTTCGACTAC ACCGCCGATG ATAAGATGTG GTTCTTCGAC GCGCGCTTTA ACTATCTTTT GACCGATAGC CAACTACTCA CCTTCGGCGC CGACTTACGC ACAGAGGAAA TGCGCTCCCA TTCCCGCTCG GGCAGTGCCA ACCCTGACTA TGTTTCCGAC TCCTTTGACT ATGATGTAAA AGGCGTTTAT CTACAGGACA CTTGGCAAGC CACTGAGTCT TTAGAAGTTG CAATGGCGCT GCGTTACGAT ACTATCAGCG CCGATTTTAC CGATCCTAAC AAACCCGGCA CCGAACTCGA TGAGTCGATT CTGTCTCCTA GGGTCGACAT TCGTCTGCGC CACAATGATG AGTGGACTTC ACGCCTATCC GCAGGTCGCG GCTATCGCGC GCCATTATCC TTCTTTGAAA CCGACCACGG CATCTTAGAC GGATCACTCG GCTTTGACAT CGATATCGAC GAGCTAGAAC GCTCCAACTC AGCCAACTAT GCCCTGAGCT ACGAGGGCGA GCGTCTCACC TCGACCGCCT CGATTGCCTG GACCGAAGTC GAGCATTTAG CGGCATTAAC CACCAACGAC CATGGTATTC CTTTGCTGAC CCAACTCGAT GAAAAAGCAA GGGTTATTAC CAGCGATATC GCCCTAGGCT ATCGTTTGAC CGACGATATG AGTCTAAGCC TAACAGCCGA GCATTTTGAT TATGACTCTG TCTTTAAATC CTCCTATGCC ATTGCACCTG TTGAAAAACG GGTCACGCTC AGCATGGATT GGGACGTGAA TGACTGGGAA ATCTTTGCCA ACCTAGTATG GATTGGTAGT CGCGATCTGT CCGACTTTGG CTACGAAGGC TATAACCGCC TCGATGCCAA TGGCCAAGTC GACCCTAGCT CGAAAAAGAC CACGGATGCC CCCTCTTACG TGACTTTAGA TTTAAAGGTC AGTTATCAGC TTAACGATAC CCTGTCGCTC TACACTGGGG TCAGCAACCT GTTTGACTAC ACCCAAGCGG GAGATGAAGA AACACCGCTA TTTTACGATG CGGAAGGCGC CTTCGACGTG GGCTATATCT ATGGCCCACT GCGAGGCAGA GAGATCTATG CAGGCATGAA GTTTAGCTTC TAA
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Protein sequence | MKPTYLAILL AALLHPPLAS ADEVNQPELD KIERVSVVGV RQRLEQAGTL ANTIMKTEVI DASVIENKNA VNLSEAIDNS PGVKVSNECS MCGVKRIMLN GMKGEQTTIL VDGLPVHTMI SGYYAVDAIP TTGVERIEVA RGAGASLIAP EAIGGTINIV SYEPTENGAE LDISAGENGY RKLGFLGKGV TQDGRTRATL VAQYDDRDQA DADNNKVNEA PMQENRSLTA RVSHDVTDTD NLVMRVANIQ SEIFGGPMLG STFADGVASS TGNVLSGYDG QSSEPQQLFE DGDVRKRYTG KAWETTEWIK TQRNEASLAW LREFNDNWNM HLTASYADHK QDSFYEGFDY TADDKMWFFD ARFNYLLTDS QLLTFGADLR TEEMRSHSRS GSANPDYVSD SFDYDVKGVY LQDTWQATES LEVAMALRYD TISADFTDPN KPGTELDESI LSPRVDIRLR HNDEWTSRLS AGRGYRAPLS FFETDHGILD GSLGFDIDID ELERSNSANY ALSYEGERLT STASIAWTEV EHLAALTTND HGIPLLTQLD EKARVITSDI ALGYRLTDDM SLSLTAEHFD YDSVFKSSYA IAPVEKRVTL SMDWDVNDWE IFANLVWIGS RDLSDFGYEG YNRLDANGQV DPSSKKTTDA PSYVTLDLKV SYQLNDTLSL YTGVSNLFDY TQAGDEETPL FYDAEGAFDV GYIYGPLRGR EIYAGMKFSF
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