| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3075 |
|---|
| Symbol | |
|---|
| ID | 4253646 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3675219 |
|---|
| End bp | 3676766 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638119717 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_735203 |
|---|
| Protein GI | 113971410 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0733836 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.924157 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATTTTA GCTATCGCAC TGTCGTTACT TTACTGAGCG TGATCATTTG CGCGAGCCTC
ATCAGGCTCG CGTTTTTCGC TATTCCTGAA AAAGCCCAAC CCACGCTGAC GACCAAAGAT
ATTCGCCAAG ATCTCTATAT TCTGTTCGAC CAAATTGAAC AACACTCGGC ATTTTACGCA
CTGGACCCAC AGGCCAATGG GCAACAACTC AAACGACTGG CAGGATTAAT CACAGAACAA
TATCAAGATG TTATCCCTAA AGAACGCTTT GCCGCCGAGC TCACAAAACT GCTTAATACC
TTGAAAGATC CAGGAACACA GGTCGCGAAA GTCGAAAATA GCAGCGGTGA ACTGCCCTTA
ACGCTCAGGC CTGTCAACGA GCAATGGCTC GCCTTGGACA GCAAAAATAA CCCCATCAGC
GCCGATTTCC CCTTTATTAC CCATATTGAT GGTATCCCCT TAAGCAAGTG GATTTCGGCC
AGCCAAGCCT ATTTATCTGA GCCTGCGAAA AACAGCCAAG AGATGCAGCT AATTTGGCTC
AAGCGACTCA ATTTACTGCG GGAGGACTTA GGCTTAAGCA TCAAGCCCCA TGTGCTTATC
AGCTTGATTA ATGATGATTT GCAGACCACG CAAGTGACTA TCGCCCTGCC GCAACCGTCA
AAAACCATAG TCAAACCGAT TGAAGTTGAG ACTGAGCTGA GTCTTGAAAG CCTCATCACC
CAACTCGATA ATTTGGCCCC AACGGCGCCA ATCAAGCCTG ATTATTTACT GGAACAGGTT
AATCCAACCA CGGCTAAGCT CAAGATTGAT GATCTCTACG CCTTTGAACT CGATAAAAAT
CAGCAGGATG CGCTTCGACA GGGAATGCAG CAGCCGTTAC TGATTGTCGA TTTGAGGCAA
GCCAAGGGAT TTAGCCCTAA GTTATTGACC ATGTTGTCGC GTTATCAAGA TATGCCGCCC
AAAAACCAGC AATATCATTC GGCGCTAGAG CAAATCATGG GCTTTGCCCA TTATCGCCGC
TCCCCCGAAC TTAGGAATGA TTATTTAAGG CCCCTCAATT TTAGGCCGCT CGAAGCATTG
GAACTCAGTT CGCCACGGCT GAATGTATTA ACTCGGCGCT TGCCCAGCAT AGATGAGAGC
CGATTCAGCC CTTGGTTTGT CCGCACTAAA CCCGAAGTGC TCGCCGAAGG TAGTAATCGC
CTTGCACTAC TCGTCAGCCC TTTGTGTAAA CAAGAGTGCG AGTGGATAGC CTACCGAACA
AAAGCCTGGT CTAGAGTCAA TTTGATTGGT GAGAAGACCT CGGGGGATTT TGCCAGACAG
TATCAACTTA CCTTACCTAA CAGTGATTTA GATGTTCGTT TTAGTAGCTC ACTCACCTAT
GACGCCGTAG GCGAGCTGCT TTCAGGAAAA GGCACTGAGC CGGATATTTG GCTGCCACAG
AACAACGATA TTGAATGGCA AGGGCTAGTC AGTTTAGTGC GCACCGCTAA ACCTAAACCC
ACAGATACGC CCCTTGGCTC TCAACCTAAG TTAGCCCAAG CCAATTAA
|
|---|
| Protein sequence | MNFSYRTVVT LLSVIICASL IRLAFFAIPE KAQPTLTTKD IRQDLYILFD QIEQHSAFYA
LDPQANGQQL KRLAGLITEQ YQDVIPKERF AAELTKLLNT LKDPGTQVAK VENSSGELPL
TLRPVNEQWL ALDSKNNPIS ADFPFITHID GIPLSKWISA SQAYLSEPAK NSQEMQLIWL
KRLNLLREDL GLSIKPHVLI SLINDDLQTT QVTIALPQPS KTIVKPIEVE TELSLESLIT
QLDNLAPTAP IKPDYLLEQV NPTTAKLKID DLYAFELDKN QQDALRQGMQ QPLLIVDLRQ
AKGFSPKLLT MLSRYQDMPP KNQQYHSALE QIMGFAHYRR SPELRNDYLR PLNFRPLEAL
ELSSPRLNVL TRRLPSIDES RFSPWFVRTK PEVLAEGSNR LALLVSPLCK QECEWIAYRT
KAWSRVNLIG EKTSGDFARQ YQLTLPNSDL DVRFSSSLTY DAVGELLSGK GTEPDIWLPQ
NNDIEWQGLV SLVRTAKPKP TDTPLGSQPK LAQAN
|
|---|
| |