| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_3054 |
|---|
| Symbol | |
|---|
| ID | 4253625 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | + |
|---|
| Start bp | 3653349 |
|---|
| End bp | 3654029 |
|---|
| Gene Length | 681 bp |
|---|
| Protein Length | 226 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 638119696 |
|---|
| Product | polar amino acid ABC transporter, inner membrane subunit |
|---|
| Protein accession | YP_735182 |
|---|
| Protein GI | 113971389 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00163204 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0154362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTAGAAG CAATCAATAC TTCGCTGTTT AGCCCCATTG GCGACGACGG CATGATAGGC
ATACTACTGA TCTTAAACGG CTTAAAAGTC ACCTTGATTG TGACCTTCTT CGCCATGTTA
TTAGGCGCAG TATTAGGCGT GGGTACCACA CTGATGAAGA TGTCATCAAA GTGGTATATC
CGCTTCCCCG CAGAGCTTTA TGTTGGCGTG ATCCGCGGCA CGCCAGTGGT GGTGCAGTTA
GTAATCCTTT ACTTCATCGT GCTGGCCGCA TTCGATGTTG ATAAGGTGAC CGCCGCCATC
ATCGCCTTTG GTTTAAACAG CGGCGCTTAT ATCTCTGAGA TTATTCGCGC AGGGATCCAA
GCCGTCGATA AAGGTCAAAC CGAAGCGGCA CGCTCGCTCG GCCTGTCACA GGCGATGACC
ATGAAGCTGA TTATTCTGCC GCAGGCGATT AAGAATATTC TGCCCGCGTT AGGCAATGAG
TTTATCGTGC TACTCAAAGA AACCGCCGTA ATTGGCTTTA TTGGCGGGGT GGATTTAATG
CGGGCGGGTG AAATTATCCG TAGCCGTACT TTTGAAGACA GTATCCCACT CTTTACCTGT
GCACTGATTT ACCTGTTCCT GACCTACAGC TTCACATTTA TGCTGTCGAA ATTCGAAAAG
AGGTTGAAGC AAAGTGATTA A
|
|---|
| Protein sequence | MLEAINTSLF SPIGDDGMIG ILLILNGLKV TLIVTFFAML LGAVLGVGTT LMKMSSKWYI
RFPAELYVGV IRGTPVVVQL VILYFIVLAA FDVDKVTAAI IAFGLNSGAY ISEIIRAGIQ
AVDKGQTEAA RSLGLSQAMT MKLIILPQAI KNILPALGNE FIVLLKETAV IGFIGGVDLM
RAGEIIRSRT FEDSIPLFTC ALIYLFLTYS FTFMLSKFEK RLKQSD
|
|---|
| |