| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2972 |
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| Symbol | |
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| ID | 4253543 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3549805 |
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| End bp | 3550458 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119608 |
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| Product | ECF subfamily RNA polymerase sigma-24 factor |
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| Protein accession | YP_735100 |
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| Protein GI | 113971307 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.000407273 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.686603 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | GTGATGTGCC AAATTATTAT GTTTCAGTTA GTTAACCATG AGGGAGCTGC TATGGCCTTG
GCGATACCGC AAATGCATGC CCATGAGCAT ACCGATGAGC AGTTAATGCA ACGCTATGCC
AAGGGCGATG GCAAAGCGTT TGAGCAGCTT TATCTTAAAC ACAAAGGCGC CTTGTACCGT
TACTTTGTGC GCCAACTCGG TGACAAACAG TTAGCCGAAG ATTTATATCA AGAAACCTGG
GGACGGGTGA TCCGTGCCGC CGCCAATTAT GAGCCGAGCG CCAAGTTTAA TACTTGGCTC
TATCGGATTG CCCATAATCT GTTGATTGAT CACGTCAGGG CGGTTAAGCC AGTTGATCTA
GTCAGTCACG ATAACGAGGA AGGGCTAGAT ACTTTTGTGG GAGCAGAGCA GGAACAACCC
GATGTGCATT GGCAGGAAAC GCAAAAAAGC TTGTTGCTGA AAACCTGTAT TGCCCTGTTA
CCCCAAGTGC AAAAAGAGGC CTTTATTCTC AATATCGAAA TGGGTTTTAC CGCTGCAGTG
ATAAGCGATA TCGCAGGGGT AACACTCGAA GCGACCAAGA GCCGCATTCG CTACGCGTAT
CAAAGCTTAA AAGATTGTGT CAATGCTAAA TGGCAGGAGG TTGGTCATGA GTAA
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| Protein sequence | MMCQIIMFQL VNHEGAAMAL AIPQMHAHEH TDEQLMQRYA KGDGKAFEQL YLKHKGALYR
YFVRQLGDKQ LAEDLYQETW GRVIRAAANY EPSAKFNTWL YRIAHNLLID HVRAVKPVDL
VSHDNEEGLD TFVGAEQEQP DVHWQETQKS LLLKTCIALL PQVQKEAFIL NIEMGFTAAV
ISDIAGVTLE ATKSRIRYAY QSLKDCVNAK WQEVGHE
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