| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2918 |
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| Symbol | |
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| ID | 4253489 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3484981 |
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| End bp | 3486144 |
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| Gene Length | 1164 bp |
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| Protein Length | 387 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 638119554 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_735046 |
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| Protein GI | 113971253 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000482793 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.320993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCGGTG ACACAATTTC AGAATTGTTA AAGGCAATTC TGCTACCCGA GAAAGGAGAA
AGCATGAAGC TATTTAATAA GATGACGACT TTGGCTTTAG TAACCGCGGG CGCCCTCGCA
AGCGTTGCTG CTCAAGCTGA AGAAGTAGTG CGCGTATATA ACTGGTCTGA TTATATCGCC
GAAGATACCT TAGAAAACTT CAAGAAAGAG ACGGGCATTC GGGTGATTTA CGATGTGTTT
GATAGTAACG AAGTGCTGGA AGCCAAGTTA CTGTCTGGCC GCAGTGGTTA CGACATCGTG
GTTCCATCTA ACCATTTCCT CGCTAAACAA ATTAAGGCTG GCGCATTCAA GCCGCTAGAC
CGCTCTAAAC TCAGCAACTT TAAAAACCTC AATGCCGATC TGATGAAACA GTTAGAGAAG
GCTGATCCTG GTAACCAATA TGCCGTGCCT TACCTTTGGG GTACCAATGG TATCGGTTAC
AACATCGATA AAGTGAAAGC CGCGGTAGGT GAAGATGCGC CATTTGATTC AATGGAGCTG
ATCTTTAACC CAAAATATGC TGAAAAAATC TCTAAGTGTG GCTTTGCTAT GCTGGATTCG
GCCGATGATA TGGTGCCACA GGCGATGATC TACCTAGGTC TTGACCCTAA CAGCACGAAA
GCCGAAGACT ATGAAAAAGC AGGTGAATTA CTCGAAAAAA TTCGCCCTTA CGTGACTTAT
TTCCACTCAT CACGCTATAT CTCTGATCTC GCAAACGGGG ATATCTGTGT GGCGTTCGGC
TTCTCAGGTG ACGTATTCCA AGCTGCGGCC CGTGCCGATG AAGCGGGTAA CGGTAATAAG
ATTGGTTACT CGATTCCAAA AGAAGGCGCG AACCTGTGGT TCGATATGTT AGCTATCCCT
GCGGATGCGG CTAACGTTGA AAATGCTCAT AAACTTATCA ACTACTTACT TCGTCCAGAA
GTGATTGCGC CTATCTCTAA CTATGTGGCT TATGCGAACC CTAACGACCC AGCACAGCCT
TTAGTTGATG AAGCGATTCG CAATGACCCT GCGATTTATC CGCCAAAAGA AGTGTTGGAT
AAATTGTATA TTGGCGAAAT CCGTCCATTG AAAATCCAAC GCGTATTAAC CCGCGTCTGG
ACCAAAGTGA AGTCTGGCCA ATAA
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| Protein sequence | MVGDTISELL KAILLPEKGE SMKLFNKMTT LALVTAGALA SVAAQAEEVV RVYNWSDYIA
EDTLENFKKE TGIRVIYDVF DSNEVLEAKL LSGRSGYDIV VPSNHFLAKQ IKAGAFKPLD
RSKLSNFKNL NADLMKQLEK ADPGNQYAVP YLWGTNGIGY NIDKVKAAVG EDAPFDSMEL
IFNPKYAEKI SKCGFAMLDS ADDMVPQAMI YLGLDPNSTK AEDYEKAGEL LEKIRPYVTY
FHSSRYISDL ANGDICVAFG FSGDVFQAAA RADEAGNGNK IGYSIPKEGA NLWFDMLAIP
ADAANVENAH KLINYLLRPE VIAPISNYVA YANPNDPAQP LVDEAIRNDP AIYPPKEVLD
KLYIGEIRPL KIQRVLTRVW TKVKSGQ
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