| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2896 |
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| Symbol | |
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| ID | 4253467 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3457773 |
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| End bp | 3459461 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 638119531 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_735024 |
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| Protein GI | 113971231 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3267] Type II secretory pathway, component ExeA (predicted ATPase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.495254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.000377738 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTACAAGG CCTTTTATGG ACTCAGTGAT AACCCTTTTT CGATTGCACC CAATCCTCAT
TATTTATTCT TGAGTGACAG ACACAGAGAA GCCTTAGCTC ATTTGACCTA TGGACTAGGT
GAGACTGGGG GATTTGTGTT ATTGACGGGG GAGGTTGGTA CGGGTAAAAC GACAGTATCT
CGTTGTTTAC TTGGGCAATT GCCCGACCAT ACCGACACGG CATTTATTTT AAATCCTTCG
CTGACTGAGT TGGAACTCCT CGCCACACTC TGTGATGAAT TGAAGATTAG CTATGGTGAA
AACCCAACCC TTAAACAGTT AACCGATCAT CTGAGCCGTT TTTTGCTGGC CAATCATGAG
AAAGGCCGCA ATACCGTACT CATTATCGAT GAGGCGCAGC ATCTGCGTGC CGAAGTATTA
GAGCAATTAA GGCTGCTCAC CAATCTCGAG ACCGACACCA AAAAACTGCT GCAGGTGATC
TTAATTGGTC AGCCAGAGCT GCAATTGCTA CTTAAACGTC AAGAGCTTAG ACAGTTAGCT
CAGCGTATTA CTGCCCGCTA TCATCTATTA CCTCTTAATG AAGATGAAAT CGCACTCTAT
GTGTTGCACC GTTTACAGGT GGCGGGTCGT TTCGAACCGC TTTTTACCCG TAAAGCAATT
AAAGTGCTGC ACAAATACAG TGGCGGTATT CCGCGGTTAA TTAACTTGTT GTGTGAGCGT
GCGCTGATGG CGGGTTACGC ACAATCTAAG GTGCCAATCG ATCACCATAT GGTGAGACAA
GCGGCGGCTG AAGTATTAGG CGAAGAAGAA CCACAGCAAA ATAAACTCTT GTGGCCGAGT
GCTATTGCGG CGGCATTAGT TGTGGCTTTC GGCGTGTCTT ATTGGTTATT TACCGAAAGT
CCAGCGGTTG CCAATGTGGT CAATTCGCCT GTGACACAAG CGAGCCAAAC GACACCAGCT
GCAACTCAAG CAGCGACTCA AGCTAATAGT ATTCAGCCGG AGCAAACACA GGCAGCGACC
CAGAGTGCGC CAGTGGCTAG CGAGCCGCAA ACGCTTGCGG CGCCGGATCC GAGTGTGCGG
GTGTTGCAGG AGGCCATCAA ACAAAGTCGC AGTATCGATA CCGCCTTTGC AGGCCTCTTT
AATGTGTGGG GTAAGGTCCC CTTTAAAGGC CTAACCGCGT GCCAGTCGGC GCTGGAGCAG
GGGCTTTCAT GCTATCAACA GCAGGGCAAT TGGATGTCGC TCACAAGGCT CAATTATCCC
GCGGTTGTGT ATTTAGTGGA TGACAACCAA CAAGATTTTT ATGGCGCTGT GATTGCTGTC
GATGGTGAGC AGCTATTAAT GCAGTTGGGC GAGCAGCAGC TTTGGGTCGA TAGAGCCTGG
TTCAATCAAC ACTTTAGCGG CACCTTTGAA ATTCTCTGGC AGGCACCTAA TTTGCCTATG
CTGGAAATCA GCCATAAGTC GAGTCCTGGA CAATTACAAT GGCTTGAAAA TGCCCTTGCC
CATGTGGCTA ACCGACCTTC GCGCCGGGTG TCTCAATTTG ATCTGAAATT AGAGAACGAT
CTTAAAGCCT TCCAAAGCCA GCATGGTTTA AAGGCCGATG GTATTGCAGG TAATCAAACC
TTAGTGAGAC TGAATTTGTA TTTAAGCGAT CAGGGACCGC GCCTCACCGA TAATGGAGCG
CAGAGTTAA
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| Protein sequence | MYKAFYGLSD NPFSIAPNPH YLFLSDRHRE ALAHLTYGLG ETGGFVLLTG EVGTGKTTVS
RCLLGQLPDH TDTAFILNPS LTELELLATL CDELKISYGE NPTLKQLTDH LSRFLLANHE
KGRNTVLIID EAQHLRAEVL EQLRLLTNLE TDTKKLLQVI LIGQPELQLL LKRQELRQLA
QRITARYHLL PLNEDEIALY VLHRLQVAGR FEPLFTRKAI KVLHKYSGGI PRLINLLCER
ALMAGYAQSK VPIDHHMVRQ AAAEVLGEEE PQQNKLLWPS AIAAALVVAF GVSYWLFTES
PAVANVVNSP VTQASQTTPA ATQAATQANS IQPEQTQAAT QSAPVASEPQ TLAAPDPSVR
VLQEAIKQSR SIDTAFAGLF NVWGKVPFKG LTACQSALEQ GLSCYQQQGN WMSLTRLNYP
AVVYLVDDNQ QDFYGAVIAV DGEQLLMQLG EQQLWVDRAW FNQHFSGTFE ILWQAPNLPM
LEISHKSSPG QLQWLENALA HVANRPSRRV SQFDLKLEND LKAFQSQHGL KADGIAGNQT
LVRLNLYLSD QGPRLTDNGA QS
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