Gene Shewmr4_2850 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2850 
Symbol 
ID4253421 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp3403113 
End bp3404903 
Gene Length1791 bp 
Protein Length596 aa 
Translation table11 
GC content48% 
IMG OID638119485 
ProductGTP-binding protein LepA 
Protein accessionYP_734978 
Protein GI113971185 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0481] Membrane GTPase LepA 
TIGRFAM ID[TIGR00231] small GTP-binding protein domain
[TIGR01393] GTP-binding protein LepA 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000704584 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones35 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACACA TTAGAAACTT CTCAATTATT GCCCATATCG ACCATGGTAA ATCGACGCTA 
TCGGATCGTC TTATTCAGGT TTGTGGCGGG TTAAGCGACC GTGAAATGGA TGCGCAAGTT
CTTGATTCTA TGGATCTAGA ACGTGAGCGC GGTATCACGA TTAAGGCGCA GAGCGTCACG
TTGGAATACA AAGCCAAAAA TGGCGAAACT TACCAACTTA ACTTTATTGA TACCCCAGGC
CACGTTGACT TTTCCTATGA AGTATCTCGT TCATTAGCCG CCTGTGAGGG CGCGCTGCTC
GTGGTGGATG CGGGTCAAGG CGTTGAAGCT CAGACGCTCG CAAACTGTTA CACCGCGCTG
GATATGAATC TGGACGTGGT GCCTATTCTA AACAAAATCG ACTTACCCCA AGCCGATCCT
GAGCGCGTAG CCGCTGAGAT TGAAGACATC GTGGGTATCG ATGCGATGAA TGCTGTGCGT
TGCTCGGCCA AAACCGGCGT GGGCATTGAC GAAGTGTTAG AAGTCATCGT TGAGCAAATT
CCGCCGCCAG AAGGCGACCC AGAGGCGCCG CTACAAGCGC TGATCATCGA CTCTTGGTTT
GATAGCTACT TAGGCGTTGT TTCTCTCGTA CGTATTAAAA ACGGCGTGCT GAAGAAAGGC
GACAAGTTTA AGGTAATGTC TACTGGACAA AACCACACCG CAGACCGCGT GGGTATTTTC
ACGCCTAAAC AAACCGATAA AACCGAGCTG AAAACCGGTG AAGTAGGTTT CGTTATCGCG
GGTATTAAAG AAATTCACGG TGCACCAGTG GGTGATACCT TGACGCTGGC TAAGCATGGC
GCTGAAAAGC CATTACCCGG CTTTAAGAAA GTGAAGCCTC AGGTTTACGC TGGTGTGTTC
CCAATTTCGA CCGATGAATA TGAAAACTTC CGCGATGCGC TGAACAAACT CAGCCTAAAC
GATGCGTCAT TGTTCTTCGA ACCTGAAAGT TCATCGGCCC TGGGTTTTGG TTTCCGTATT
GGCTATTTAG GCCTGCTCCA CATGGAAATC ATTCAAGAGC GTTTAGAGCG TGAATACGAT
CTTGACCTTA TCACGACGGC ACCAACCGTA GTGTATGAGG TGCTGTTGAC CAGTGGTGAA
ACCGTCTATG TTGATAACCC AGCAGACTTG CCAGCGATTA ACAACATTGA AGAGATGCGT
GAGCCAATCG TTGAAGCTAA CATTCTGGTG CCAAAAGAAT ACTTAGGTAA CGTGATTACA
TTGTGTATCG AAAAACGTGG TACCCAAGTG AACATGGTTT ACCACGGTAA TCAAGTGGCC
GTGACTTACC ATCTGCCGAT GGCTGAAGTG GTGATGGACT TCTTCGACCG CTTAAAATCG
ACTAGCCGTG GTTATGCATC GTTAGAATAC AACTTCATTC GCTTCGATCC TGCGGACATG
GTGCGCTTAG ACATTCTGAT CAACGGCGAC CGCGTAGACG CATTGGCGAT GATTATTCAC
CGTTCAAACA TTCGTCACCG TGGTTTAGCG TTGGTTGAGA AGATGAAAGA GCTGATCCCA
CGTCAGATGT TCGATATCGC GATTCAAGCC GCTGTTGGCA GCCAAATTAT TGCCCGTTCT
ACCGTAAAAG CCCTACGTAA AGACGTAACG GCGAAGTGCT ACGGTGGTGA CGTTTCCCGT
AAGAAGAAAC TCTTGAATAA ACAAAAAGAG GGTAAGAAAC GGATGAAACA AGTGGGTAAC
GTTGAGGTGC CGCAAGAGGC GTTCTTAGCG GTACTTAAGC TAAACGAGTA A
 
Protein sequence
MKHIRNFSII AHIDHGKSTL SDRLIQVCGG LSDREMDAQV LDSMDLERER GITIKAQSVT 
LEYKAKNGET YQLNFIDTPG HVDFSYEVSR SLAACEGALL VVDAGQGVEA QTLANCYTAL
DMNLDVVPIL NKIDLPQADP ERVAAEIEDI VGIDAMNAVR CSAKTGVGID EVLEVIVEQI
PPPEGDPEAP LQALIIDSWF DSYLGVVSLV RIKNGVLKKG DKFKVMSTGQ NHTADRVGIF
TPKQTDKTEL KTGEVGFVIA GIKEIHGAPV GDTLTLAKHG AEKPLPGFKK VKPQVYAGVF
PISTDEYENF RDALNKLSLN DASLFFEPES SSALGFGFRI GYLGLLHMEI IQERLEREYD
LDLITTAPTV VYEVLLTSGE TVYVDNPADL PAINNIEEMR EPIVEANILV PKEYLGNVIT
LCIEKRGTQV NMVYHGNQVA VTYHLPMAEV VMDFFDRLKS TSRGYASLEY NFIRFDPADM
VRLDILINGD RVDALAMIIH RSNIRHRGLA LVEKMKELIP RQMFDIAIQA AVGSQIIARS
TVKALRKDVT AKCYGGDVSR KKKLLNKQKE GKKRMKQVGN VEVPQEAFLA VLKLNE