Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_2850 |
Symbol | |
ID | 4253421 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 3403113 |
End bp | 3404903 |
Gene Length | 1791 bp |
Protein Length | 596 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638119485 |
Product | GTP-binding protein LepA |
Protein accession | YP_734978 |
Protein GI | 113971185 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0481] Membrane GTPase LepA |
TIGRFAM ID | [TIGR00231] small GTP-binding protein domain [TIGR01393] GTP-binding protein LepA |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00000704584 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACACA TTAGAAACTT CTCAATTATT GCCCATATCG ACCATGGTAA ATCGACGCTA TCGGATCGTC TTATTCAGGT TTGTGGCGGG TTAAGCGACC GTGAAATGGA TGCGCAAGTT CTTGATTCTA TGGATCTAGA ACGTGAGCGC GGTATCACGA TTAAGGCGCA GAGCGTCACG TTGGAATACA AAGCCAAAAA TGGCGAAACT TACCAACTTA ACTTTATTGA TACCCCAGGC CACGTTGACT TTTCCTATGA AGTATCTCGT TCATTAGCCG CCTGTGAGGG CGCGCTGCTC GTGGTGGATG CGGGTCAAGG CGTTGAAGCT CAGACGCTCG CAAACTGTTA CACCGCGCTG GATATGAATC TGGACGTGGT GCCTATTCTA AACAAAATCG ACTTACCCCA AGCCGATCCT GAGCGCGTAG CCGCTGAGAT TGAAGACATC GTGGGTATCG ATGCGATGAA TGCTGTGCGT TGCTCGGCCA AAACCGGCGT GGGCATTGAC GAAGTGTTAG AAGTCATCGT TGAGCAAATT CCGCCGCCAG AAGGCGACCC AGAGGCGCCG CTACAAGCGC TGATCATCGA CTCTTGGTTT GATAGCTACT TAGGCGTTGT TTCTCTCGTA CGTATTAAAA ACGGCGTGCT GAAGAAAGGC GACAAGTTTA AGGTAATGTC TACTGGACAA AACCACACCG CAGACCGCGT GGGTATTTTC ACGCCTAAAC AAACCGATAA AACCGAGCTG AAAACCGGTG AAGTAGGTTT CGTTATCGCG GGTATTAAAG AAATTCACGG TGCACCAGTG GGTGATACCT TGACGCTGGC TAAGCATGGC GCTGAAAAGC CATTACCCGG CTTTAAGAAA GTGAAGCCTC AGGTTTACGC TGGTGTGTTC CCAATTTCGA CCGATGAATA TGAAAACTTC CGCGATGCGC TGAACAAACT CAGCCTAAAC GATGCGTCAT TGTTCTTCGA ACCTGAAAGT TCATCGGCCC TGGGTTTTGG TTTCCGTATT GGCTATTTAG GCCTGCTCCA CATGGAAATC ATTCAAGAGC GTTTAGAGCG TGAATACGAT CTTGACCTTA TCACGACGGC ACCAACCGTA GTGTATGAGG TGCTGTTGAC CAGTGGTGAA ACCGTCTATG TTGATAACCC AGCAGACTTG CCAGCGATTA ACAACATTGA AGAGATGCGT GAGCCAATCG TTGAAGCTAA CATTCTGGTG CCAAAAGAAT ACTTAGGTAA CGTGATTACA TTGTGTATCG AAAAACGTGG TACCCAAGTG AACATGGTTT ACCACGGTAA TCAAGTGGCC GTGACTTACC ATCTGCCGAT GGCTGAAGTG GTGATGGACT TCTTCGACCG CTTAAAATCG ACTAGCCGTG GTTATGCATC GTTAGAATAC AACTTCATTC GCTTCGATCC TGCGGACATG GTGCGCTTAG ACATTCTGAT CAACGGCGAC CGCGTAGACG CATTGGCGAT GATTATTCAC CGTTCAAACA TTCGTCACCG TGGTTTAGCG TTGGTTGAGA AGATGAAAGA GCTGATCCCA CGTCAGATGT TCGATATCGC GATTCAAGCC GCTGTTGGCA GCCAAATTAT TGCCCGTTCT ACCGTAAAAG CCCTACGTAA AGACGTAACG GCGAAGTGCT ACGGTGGTGA CGTTTCCCGT AAGAAGAAAC TCTTGAATAA ACAAAAAGAG GGTAAGAAAC GGATGAAACA AGTGGGTAAC GTTGAGGTGC CGCAAGAGGC GTTCTTAGCG GTACTTAAGC TAAACGAGTA A
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Protein sequence | MKHIRNFSII AHIDHGKSTL SDRLIQVCGG LSDREMDAQV LDSMDLERER GITIKAQSVT LEYKAKNGET YQLNFIDTPG HVDFSYEVSR SLAACEGALL VVDAGQGVEA QTLANCYTAL DMNLDVVPIL NKIDLPQADP ERVAAEIEDI VGIDAMNAVR CSAKTGVGID EVLEVIVEQI PPPEGDPEAP LQALIIDSWF DSYLGVVSLV RIKNGVLKKG DKFKVMSTGQ NHTADRVGIF TPKQTDKTEL KTGEVGFVIA GIKEIHGAPV GDTLTLAKHG AEKPLPGFKK VKPQVYAGVF PISTDEYENF RDALNKLSLN DASLFFEPES SSALGFGFRI GYLGLLHMEI IQERLEREYD LDLITTAPTV VYEVLLTSGE TVYVDNPADL PAINNIEEMR EPIVEANILV PKEYLGNVIT LCIEKRGTQV NMVYHGNQVA VTYHLPMAEV VMDFFDRLKS TSRGYASLEY NFIRFDPADM VRLDILINGD RVDALAMIIH RSNIRHRGLA LVEKMKELIP RQMFDIAIQA AVGSQIIARS TVKALRKDVT AKCYGGDVSR KKKLLNKQKE GKKRMKQVGN VEVPQEAFLA VLKLNE
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