| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2700 |
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| Symbol | |
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| ID | 4253271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3219763 |
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| End bp | 3221430 |
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| Gene Length | 1668 bp |
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| Protein Length | 555 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 638119335 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734828 |
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| Protein GI | 113971035 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.418522 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.000139033 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAGCAAAA CTAACTTACA CAATTTCTGG TGCTTTTTGC TGCTTCTTTG GACATTTAGT
CCGTTTGCCT TTAGCGCTGA AATTGCGTTG GATTCCCCCT ATTTATTCCA TGCCGATGCT
AAACAACTTC CGCCCTCTGA CTTTAATCAA GTCACCCAAT GGATGAGCCA GCTTGAGGAA
GCCAGTTCGG TAAGTCTCGC CGGGGGCGAT TATTGGATGG TGTCTCCCGT AATGGTTAAC
AGTCGACAAA CCCGTTGGGT GGTGGATGCC AGTAATTCCA TTGTGGAGTA TGTCGATTAT
TGGTTGCTCG GCAGCGATGG CTCAGTGCAA TTCGCCCAGA GTGGTTATTA TGCGCCCTAT
GAGTTTTTGT TCGATTATGG TCGTAAAGTT AGGCTAAATA TGGGGACGGA TTATTGGTTA
GTGACTCGGC TGAGCAGCCG ATACTTCTCA TCAGCCCCTG AGCTGGCAAT TGAGTTGGAA
GAAGCGCACC AATTGACGAC GGATCGCATG GCCTTAGCCA TAATGATTTG TTTAGGAGGA
TTGTTTTTTA TTGCCCTCTA TAATCTACTG ATTTACTTCT CTATTTTTGA TAAGGCCTTT
ATGTATTACG GCCTGTATGT GTTGACCTAT TTTGGTGGTT GGGCCTTGAC CTTCCATTTA
CCGGCGCACC TATTCCACTT TTATCAGCTT GAGTTGCATC ATCTGTTTTT TATTAGTTTG
CCGATATTTA ACATCCTGTT CTACAAACAC TTCTTACAGC TTCCCAGCTA TTCGCCGCGA
TTATGGCGCC TTAGCAAGTA CCTGTTAATC GCCTGCATTT TAGCTCTGCC AACCAGTATC
TGGTTATTGT CCTACACCGC GATTATTGCC TCGGTATTAA TCATGCTGTG GATTGCACTG
GCCATTACCT GCGGCAATGT CTGTTTGATG AAAGGCTTTG CTCCCGCCCG TTATTTTATT
ATGGCTTTTA GCTGCTTATT GCTGCCAGCG TTAATTATTC TTCCGGGCAA TATGGGGATC
ACCCCAGATT TTATCGAACA TGCCGAGTTT GCCACGCTGT TGGGCGGCAC TGTGGATGCC
CTGTTGTTAT CCCTCGCGTT AGCGAACAAG CTTAAACTCC TATCCGAGGA ACGTAAGGCG
CATATCGAAG AGTTAGGAAT CGCTTGGGAA AAGGCTAGGC TCGATGGTTT AACTCGGGTC
GGTAATCGTT ATGCCTTTGA TGAGTTTATG AATTCACAAT TGGCCTTTGG CAAAAAAGTG
GTTCAGCCAA TGGCTTTGGT GTTGCTCAAT GTCGACAGCC TTAAAATGGT GAACGATACC
TTAGGGCATC AAGAGGGCGA TCGTTTACTG CAACACTTAG TACAGGTTTT GCAGGCGACT
AATATTGCCC ACCTTAAAAT TTATCGGATC AGTGGCGATG AGTTTGTGCT GATCCTGCCC
GCAAATGGCA TGGGGATCTT AACCAGCAGC TTAAAGGGAT TAACGGCACA ATTTGCAGAA
GAAGGCTTGA AGGATTGCCA GTTTAGTTTT GGTTTCGCCA TCAATACCGA TGTGGCCGAG
CCCCACGAGT GGCTTCGCAG CGCCGATAGT AGTTTGTATC AGTCGCGGAT GGAAAAGCGC
CGTCAGGAAT ACGCCGATAC CCGCGCGGGC GAGATTGTCT CGATTTAG
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| Protein sequence | MSKTNLHNFW CFLLLLWTFS PFAFSAEIAL DSPYLFHADA KQLPPSDFNQ VTQWMSQLEE
ASSVSLAGGD YWMVSPVMVN SRQTRWVVDA SNSIVEYVDY WLLGSDGSVQ FAQSGYYAPY
EFLFDYGRKV RLNMGTDYWL VTRLSSRYFS SAPELAIELE EAHQLTTDRM ALAIMICLGG
LFFIALYNLL IYFSIFDKAF MYYGLYVLTY FGGWALTFHL PAHLFHFYQL ELHHLFFISL
PIFNILFYKH FLQLPSYSPR LWRLSKYLLI ACILALPTSI WLLSYTAIIA SVLIMLWIAL
AITCGNVCLM KGFAPARYFI MAFSCLLLPA LIILPGNMGI TPDFIEHAEF ATLLGGTVDA
LLLSLALANK LKLLSEERKA HIEELGIAWE KARLDGLTRV GNRYAFDEFM NSQLAFGKKV
VQPMALVLLN VDSLKMVNDT LGHQEGDRLL QHLVQVLQAT NIAHLKIYRI SGDEFVLILP
ANGMGILTSS LKGLTAQFAE EGLKDCQFSF GFAINTDVAE PHEWLRSADS SLYQSRMEKR
RQEYADTRAG EIVSI
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