| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2650 |
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| Symbol | |
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| ID | 4253221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 3157324 |
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| End bp | 3158178 |
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| Gene Length | 855 bp |
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| Protein Length | 284 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638119285 |
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| Product | tRNA pseudouridine synthase C |
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| Protein accession | YP_734778 |
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| Protein GI | 113970985 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTAG ATGATGATTG GCTGGATATG CCAGAGGATA AATACAACCC AAGCGAGAGC
GACGAGCAGT CAGAGCTTGC GCCAGAGCTG CGTGTTTTGT ATCAAGACGA GCACTTGGTG
GCTATCCACA AACCCGCGGG GTTATTGGTT CATCGAAGCT ACTTAGCGCG GCGTGAGCGC
TTTTTTGCGA TGCAGCTGAC TCGGGACTTG GTTGGTTGCC ATGTGTTTCC GGTTCACCGT
TTAGATAGAC CCACCTCGGG TGTGTTGTTA TTTGCCAAAA GCAGTGAGGT GGCCAACGCC
CTTTGCGAGC AATTTGCCAA CCACAGTATT GAAAAACAAT ATTTGGCACT GGTACGTGGC
AATATGCACG AGAGTGGCAT TTTGGATTAT GCGCTTAAAG TCGAATTGGA TGAGGTGGCT
GACAAGTTTG CCAATCAAGA TAAAGCCGCG CAGGATGCTG TGACTCAATA TGAGCCGCTG
TTAAATACCG AAATTCCTTA TCCGTCGGGG CGTTATGCTA CCAGCCGCTT CGCGTTAGTT
AAACTGAGTC CCAAAACGGG GCGTAAGCAC CAACTCAGAC GCCATATGGC GCATTTACGT
CATCCGATTA TTGGCGATAC CACCCACGGC GATGGGAAAC AAAATGCGTT TTTCCGCGCG
CATTTCGATA TCAATCGATT GTGGCTGATT GCGAAGAAGT TAACCTTCAC TCACCCGGTG
ACACTTGAGC GCTTAAGTAT TGAAACCGAG CTTGAGCCAG AATGGGAAAC CGTGTTTGCA
GGATTGGGCT GGGACGATGC CGCGCTTTGT CGAGAGCCAA GTGTGTTGAT TGCAGGGCAA
ACGACGACCG TTTAA
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| Protein sequence | MNLDDDWLDM PEDKYNPSES DEQSELAPEL RVLYQDEHLV AIHKPAGLLV HRSYLARRER
FFAMQLTRDL VGCHVFPVHR LDRPTSGVLL FAKSSEVANA LCEQFANHSI EKQYLALVRG
NMHESGILDY ALKVELDEVA DKFANQDKAA QDAVTQYEPL LNTEIPYPSG RYATSRFALV
KLSPKTGRKH QLRRHMAHLR HPIIGDTTHG DGKQNAFFRA HFDINRLWLI AKKLTFTHPV
TLERLSIETE LEPEWETVFA GLGWDDAALC REPSVLIAGQ TTTV
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