| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2343 |
|---|
| Symbol | |
|---|
| ID | 4252914 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2793294 |
|---|
| End bp | 2793908 |
|---|
| Gene Length | 615 bp |
|---|
| Protein Length | 204 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 638118968 |
|---|
| Product | lysine exporter protein LysE/YggA |
|---|
| Protein accession | YP_734471 |
|---|
| Protein GI | 113970678 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1279] Lysine efflux permease |
|---|
| TIGRFAM ID | [TIGR00948] L-lysine exporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.581715 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000000535695 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAAACGG CGTTTATACA AGGTATGGGC ATAGGTGGTA GTTTGATTAT TGCCGTAGGG
GCGCAAAATG CCTTTGTGCT AAAGCAGGGG ATTAAGCGAG CTTATCCTTT GCCGATTGCG
CTGCTTTGTT CAATCATCGA TGCCTTAATG ATCACTGCGG GGGTGGCGGG GCTTGGGCAC
ATTATCGAAG CCTTCCCGAC TATCAAACAT GTGGCCAGTT TTGGTGGGGC CGCCTTTTTG
ATTTGGTACG GCGCTAATGC ACTTAAGGCC TCGTTTGTCG CTAAAGGGAT GGAGATGGAT
AATGCGCAAA ATGGTGACAC TTTGCGTAAG GCCGTGCTGA CCACGCTTGG GATCAGCCTG
CTTAATCCAC ACCTTTATTT AGATACCGTT GTGCTGCTGG GGAGCATTAG TACTCAGTTC
GAAGATGCCC ATCGTCCTTG GTTTGGTGCG GGCGCGGTAT TGGCTTCGTT TATTTGGTTC
TTCAGCCTAA GTTTTGGTGC GCGTTTATTG GCGCCGATAT TTAGCCGCCC AGCGGCGTGG
CGATACTTAG ACCGCTTTAT TTGGTTGACC ATGTGGAGCA TTGCCGCGGC AATTATTTGG
CCTTATCTGG CCTAA
|
|---|
| Protein sequence | MQTAFIQGMG IGGSLIIAVG AQNAFVLKQG IKRAYPLPIA LLCSIIDALM ITAGVAGLGH
IIEAFPTIKH VASFGGAAFL IWYGANALKA SFVAKGMEMD NAQNGDTLRK AVLTTLGISL
LNPHLYLDTV VLLGSISTQF EDAHRPWFGA GAVLASFIWF FSLSFGARLL APIFSRPAAW
RYLDRFIWLT MWSIAAAIIW PYLA
|
|---|
| |