| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2243 |
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| Symbol | |
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| ID | 4252814 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2682324 |
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| End bp | 2684504 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 638118868 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_734371 |
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| Protein GI | 113970578 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0252509 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.0700768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTGTAC CTGCTGTTAA TGCCGCCCAT CTAAAGTTAG CCACCTTTCT TGGTCTACTG
GGTCTAATAC TCAACATTTA CCCTATTCCG CTCTTTGCTA ACGTGCAGCT TATTTTAGGT
AATGCGGCGG TAGTAATAGT GGCCATTCTG CTTGGGCCTT GGTATGCCCT ATTGACAGCC
TTATTTACGG CAACAGGCTT GATGTTGGCC TGGTCCAGTG CCCATGTGTA TCTGGTGTTT
TTACTCGAAG CCCTTTGGTT GGGGTTTGCG CGGCGCAGAG ACGTACCTAT CCTGTACGCC
AGTATAAGTT ACTGGCTGTT AATAGGTTTG CCATTAATGA GTTTGTACCT GTGGCTTATC
ACGGGAATGC CAGCTTACCA CATCCCTTTT ACCACAATAA AACAAGCATT TAACGGGATT
TTCTACACCA CGTTAGGGGA GCTTTGCGTG GTCGCCCTCC CCAGTTTATG GCATTTAAAA
GATAGGTTGG TGAATCACAC TCGCCGAACC ATGAGTTCAC AGATCAGCTA TCTGTTTATT
TTAATTACCA CCATCAGCTT ATTAACCTCA TCCTTAGTGT TTAACCATTA TTTCATGGAT
AAACAACAAA TATTGATTAA TCAGAATCTT AACGACACAG GCATCTCCCT TGGACACGCC
ACCGAAACCT ACATTAGTAC TAACACCCGT ACCATTGCCA GTGTCGGGAA ATTTATCAGT
GTATCGGGTC TACCTTTTGA ACAATGGCAG CGCATACTCG ATAGCGTCCA GAGTCTGACC
CCCAGTTTTA CCACTATGTT TATTGCCAAT GAACATGGGG AGATTGTCGC AGGAAGCCCT
ATTGAAAAGC TTAATAATTT CAAAAAGCTG GAACAAAGGT TCAATGTGCA AGATAGGGAT
TACTTTATCC AAGCCCTCAT TAACCACAAC ACCTTTGTGT CCCCCGTCTT TATCGGAAGG
GGTTTAGATA AAGAAATCAT CATTGCTATC AGTACCCCCA TTTTTAAAGA AGGCTCTAAC
ACCGCCATAG GTATTGTGCA AGGAAGCCTA GACTTGGGGT ATTTCTCCAA TATTGATAAA
CAAAATCAAC ACCATGAAAC ACAGTCTATT ATTTTATTGG ATGAGAAAAA GAACATCGTT
TATGCATCCG AAAGACTCGG ACTCACCCCG TTAACGCCCT TCAACTTCAT CACCGGCAGT
ACTGAATACC GTACCCGATT AAAATTGATG GACATTAATC AATCAGAAGC TGATACCCCT
GAATATATTT ATGCTCACCA TCAACTGAAT AATGGCTGGC ATTTGTATGT GGTGGAACCT
TTCGTTCCCT TATTGAAATT AGCGCAAGAG CAATATACTA AGACGATAGC GCTGTTATTA
CTGAGTATGA TAGGTGCCGT GATTATCGCT AAGGCGATCA GTCGCTTAAC GACCACTCCC
CTCGCCTTAC TGGCTCAACA CTTTAGTCAA ACAAAAGATG GCAGTTTTAA TGAGGAAAAG
TTTGAGCATG AACTCCTCAA CAACAGCACA CCTAAAGAAA TCTATAGTCT GTATGAGAGC
TTAGAAGCGA ATCAACAAGC ATTGCTCACT CATCAATTCG AGTTAGAAGA TAAAGTGAAA
CAGCGCACTA TGGATTTAGA GGCCGCTAAC CGCAAACTCA AGGACATGGC GGAGCGGGAT
TCATTAACCA ATCTCTATAA CCGCCGTTAT ACCGAAAACC AATTCCTCAA AATCCAAGAT
CTGTGTGAGC GTGGTCAAGA TGCGATTGCC GTAGTATTAC TCGATCTCGA TTACTTCAAA
AAAGTGAACG ATACCTACGG CCATCTCGCG GGCGATGAAT GTCTGCGAGT GATGGCAGAG
GTCTTATCGC GCCACTTTAA GCGCGACGTC GATCTGCTAT GCCGTTACGG CGGTGAAGAG
TTTATCTTGA TATTACCTAT GTGTAATAGC CTGAAAGTCG AGCAGCATCT TAATGACTTC
CGCGAAAAAC TCGCCAGCGT CATCATTACC AATCCGGCCG ATCAAGTCAC CTTTAGCGTA
ACCGTAAGCA TAGGCGCCAT CATTGCGGAT GCAACTTACA GTACAACACT TGACGTCTGG
TTAAAGCAGG CTGACGAAAA TCTGTATAAG GCAAAAGAGC AAGGGCGCAA CCGTGTTGTT
TGCACCCTAA TCTCCTCTTA A
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| Protein sequence | MRVPAVNAAH LKLATFLGLL GLILNIYPIP LFANVQLILG NAAVVIVAIL LGPWYALLTA
LFTATGLMLA WSSAHVYLVF LLEALWLGFA RRRDVPILYA SISYWLLIGL PLMSLYLWLI
TGMPAYHIPF TTIKQAFNGI FYTTLGELCV VALPSLWHLK DRLVNHTRRT MSSQISYLFI
LITTISLLTS SLVFNHYFMD KQQILINQNL NDTGISLGHA TETYISTNTR TIASVGKFIS
VSGLPFEQWQ RILDSVQSLT PSFTTMFIAN EHGEIVAGSP IEKLNNFKKL EQRFNVQDRD
YFIQALINHN TFVSPVFIGR GLDKEIIIAI STPIFKEGSN TAIGIVQGSL DLGYFSNIDK
QNQHHETQSI ILLDEKKNIV YASERLGLTP LTPFNFITGS TEYRTRLKLM DINQSEADTP
EYIYAHHQLN NGWHLYVVEP FVPLLKLAQE QYTKTIALLL LSMIGAVIIA KAISRLTTTP
LALLAQHFSQ TKDGSFNEEK FEHELLNNST PKEIYSLYES LEANQQALLT HQFELEDKVK
QRTMDLEAAN RKLKDMAERD SLTNLYNRRY TENQFLKIQD LCERGQDAIA VVLLDLDYFK
KVNDTYGHLA GDECLRVMAE VLSRHFKRDV DLLCRYGGEE FILILPMCNS LKVEQHLNDF
REKLASVIIT NPADQVTFSV TVSIGAIIAD ATYSTTLDVW LKQADENLYK AKEQGRNRVV
CTLISS
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