Gene Shewmr4_2134 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagShewmr4_2134 
Symbol 
ID4252707 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella sp. MR-4 
KingdomBacteria 
Replicon accessionNC_008321 
Strand
Start bp2550110 
End bp2552929 
Gene Length2820 bp 
Protein Length939 aa 
Translation table11 
GC content46% 
IMG OID638118758 
ProductTonB-dependent receptor 
Protein accessionYP_734264 
Protein GI113970471 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG1629] Outer membrane receptor proteins, mostly Fe transport 
TIGRFAM ID[TIGR01782] TonB-dependent receptor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.13023 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGCGAT TTAAACCCAG CTTGCTGACC TTAGCACTCG TTGCTGCAGG CGCCAGTATG 
CACTCCTACG CAGCAGATGA TGTAAAAGAA AAAGACCTAA AAGCCAAAGA TGCCGAAATT
GAAGTAATCC AAGTTAAAGG CTTCAGAACC AGTGTGATCA AATCGCTTAA TGAAAAACGT
TTTGGCGATA CCGTATCTGA ATCTATCTCT GCCGACGACC TCGGCGCCCT GCCCGACCAA
TCTATCGCCG ATGCGTTAAC CCGTTTACCA GGCGTCACCG CTGTTCGTAC TGGCGGCCAA
GCCAGTGGTT TGAACATCCG TGGTCTGGAT GGCGATTTCG TGTTTGCAAC CCTCAATGGC
CACGAACAGG TGACCACTGG TGGTAAACGT GCCATTGAGT TTGACCAATA TCCATCCGAA
TTAATTAGTC AGGCAGCGGT TTACAAAACA CCTAAAGCCT CACTGATCGA AGGCGGCGTG
GCCGGTACGG TTGAATTAAA AACCGCCGAT CCGCTGAAGA ATGACAAAGA TCAATCATTC
AATATCAATG CCCGTGGCAG CTTTAACGAT CGCGCCGATG AAATCTCCGA TGCAGAGCAA
TACGGCAATC GTTTAAGTCT CGCTTATCAA GGTAAATTCC TCGAAGACAC CTTAGGGGTG
GCAGTGGGCT ATGCTCACCT GTATCAACCT TATGTTGCAA GCCAATTCAT TGGGTTACGT
TTTAATGATG ATAAAAAAGA CGTTAACGGT GACGGTGTAA CCGAAGCGAT TAGTGAAGGT
TTTGAACTGC AACAAAAAGG CGGCGACGAT ACCCGTGATG GCTATATGGC TGCTATCCAT
TGGCAACCGA GTGACAGCCT GAGTGTGAAG GGCGATCTGT TCCACTCTAA ATTTACCTCT
GAAAACTTTG CCCGTGGTTT CCGCGTCAAG TCATTGAAAA ATGGTACTAT CAGTGATGCC
GTTGTCGAAA ACGGTTCTAT GACGGGTGGT ACAGTCTCTA CTGATGGCAC GGATAACTTT
GCGGTTTTCG TGATCAACGA TAACGACTCA AAATACTCAG AATTGACTTC AGGCTCTTTG
AACCTTGAGT GGAATAACGG TGGCGCACTG ACAGTGGCGG CCGATGTCAG CTATTCCAAA
GCCGATGGTG AATTCGTTAA CGGCGGTACT CGCGCCGTGT TGTACGATGA TCTGGGCAAT
GAAGTTCGTT CAGCTGAGTC TGTTACTTAT CAACTGAATG GCTTAAATCC TGCGGATGTC
AGCTTTGCTA ACGACTACAC CAATACCTCG ACCCTAGGTC TGAAAGAAGT GGGTATGTGG
CCCTATAATC AGCAAAACGA TCTGATTGCC TACAAACTCG ATTTTAACTA TGTCTTAGAC
ACCAGCTTTG TCTCTTCTGT TGATTTTGGT GTGCGTTATG CTGAACGTGA ATTCAACGCA
CAGCGTTCAC AGGCAGGTTA CGGTTTCGAG TTTGGTAAAA ACCCTGATAA TCAACCAGTC
CTAGCACTGA ACGGCGATAT GGCCAAAGTG GTTGATTTTG GTGGTGAATT AGCAGGTTAC
CCAAGTTTCC TCGCCATTGA CTTTAACAAA GCCATTGAAC TGGTGAACGC ACAACTGGCG
GCAACTGGCC AATCACCTTT CACTCCAACG GCGAACTGGT CAAATAACTG GACCATGATC
CAAAGCGGCG CGGTCAATGA AGATGTATTA GCCGGTTACG TGCAGGCAAA CTTAGACTTC
GATATCGGCG ATGTTAAAGT CACAGGTAAC TTAGGTGTAC GTGTCGTACA CACAGATCAA
AGCAGTACTG GTCTGCAACA AGTTGGTTAT GGTTTAGGTG AAGCCATTAC CGATGAGCAA
GGCGTCGTAA GCACGGATTA TATCCGTAAC AAGGTCGGCA AAACCTATAC CGACTACTTA
CCGTCACTGA ACTTAACCTT CCACCTGACT GAAAACGATC AACTGCGTTT TGCAGCGGCC
TCTGTGATGT CACGCCCACC AATCGACAAG TTAAAGTCAG GTATGGGTTC TTGGTATGAC
GACTCTGCTA CGCCTGGATA CAAAAAGTAC AATGCGTGGG GTAACACCAG TCCGTTATTA
GATCCTTTCT ATGCGGATCA ATATGACTTG TCCTACGAGC ACTACTTTGA AGAGTCTGAA
GGTGCGGTCG TTGTGGCCTT GTTCTATAAA GATATTAAAT CTTTCATCAA CAACTTCACT
ATTCAACCAT TTGATTTTGA AGCGAATGGC TTTATCGTGC CCGATACCAT TATCGACAAT
GGCGTTGAGT TCCCAGTTGT TAAAGATGAA GGCCAATATC AAACAGCCAT CAACAACGAT
AAAGGCGGTT ATATCCGTGG TATCGAGTTA GGCTATACCC AAGTGTTTGA TTTCCTACCG
TCACCTTTAG ATGGTTTAGG TTTCACTGGT AGCTATTCCT ATTCAGACAG TGAAGTGGAA
TTCACTACAG ACTTAAGCGG TTCTAACCTG ACCATTCCAT TACCAGGTCT GTCAGAAAAC
GTGCTGAACA CTACCCTGTT CTACACCTTG GATGGTTTCG ATACCCGTGT GAGCATGAGA
TACCGTAGTA GTTATGTGTC AGAGCAAGTT GCGGTTGAAT CTCAACTGGC GTTCTTTGAT
GCAGAAACGA TTGTGGATTA TCAGGCTTCT TATGCGCTGG ACAACGGACT TAAGTTCCTG
TTCCAAATCA ATAACCTCAC CGATGAGCCT AATAAAACTT ACTTTGGTGA AGAGCATCAA
ACCGGAACAA TTCAATACTT CGGTAGACAA TATTTCCTTG GTTTAACCTA CTCTCTGTAA
 
Protein sequence
MMRFKPSLLT LALVAAGASM HSYAADDVKE KDLKAKDAEI EVIQVKGFRT SVIKSLNEKR 
FGDTVSESIS ADDLGALPDQ SIADALTRLP GVTAVRTGGQ ASGLNIRGLD GDFVFATLNG
HEQVTTGGKR AIEFDQYPSE LISQAAVYKT PKASLIEGGV AGTVELKTAD PLKNDKDQSF
NINARGSFND RADEISDAEQ YGNRLSLAYQ GKFLEDTLGV AVGYAHLYQP YVASQFIGLR
FNDDKKDVNG DGVTEAISEG FELQQKGGDD TRDGYMAAIH WQPSDSLSVK GDLFHSKFTS
ENFARGFRVK SLKNGTISDA VVENGSMTGG TVSTDGTDNF AVFVINDNDS KYSELTSGSL
NLEWNNGGAL TVAADVSYSK ADGEFVNGGT RAVLYDDLGN EVRSAESVTY QLNGLNPADV
SFANDYTNTS TLGLKEVGMW PYNQQNDLIA YKLDFNYVLD TSFVSSVDFG VRYAEREFNA
QRSQAGYGFE FGKNPDNQPV LALNGDMAKV VDFGGELAGY PSFLAIDFNK AIELVNAQLA
ATGQSPFTPT ANWSNNWTMI QSGAVNEDVL AGYVQANLDF DIGDVKVTGN LGVRVVHTDQ
SSTGLQQVGY GLGEAITDEQ GVVSTDYIRN KVGKTYTDYL PSLNLTFHLT ENDQLRFAAA
SVMSRPPIDK LKSGMGSWYD DSATPGYKKY NAWGNTSPLL DPFYADQYDL SYEHYFEESE
GAVVVALFYK DIKSFINNFT IQPFDFEANG FIVPDTIIDN GVEFPVVKDE GQYQTAINND
KGGYIRGIEL GYTQVFDFLP SPLDGLGFTG SYSYSDSEVE FTTDLSGSNL TIPLPGLSEN
VLNTTLFYTL DGFDTRVSMR YRSSYVSEQV AVESQLAFFD AETIVDYQAS YALDNGLKFL
FQINNLTDEP NKTYFGEEHQ TGTIQYFGRQ YFLGLTYSL