| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_2100 |
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| Symbol | |
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| ID | 4252673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | - |
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| Start bp | 2504500 |
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| End bp | 2505555 |
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| Gene Length | 1056 bp |
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| Protein Length | 351 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 638118724 |
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| Product | secretion protein HlyD family protein |
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| Protein accession | YP_734230 |
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| Protein GI | 113970437 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 0.528355 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGACG CAAACCCTCA AGCCCCTCAA GGTAATATGC GTAAAAAACG CAGCGTGTTA
CTGATTGTGG TTCCTCTGTT ATCTGTTTTG ACCATAGGTG CGGTTTATCT GCATGGCGGC
CGCTACATGG AAACCGATAA CGCCTACGTG AAGGCGGATA AAGTCCCCGT GAGTGCTCAA
GTGGCCGGGA ATGTGGACAG CTTGTATGTG GTGGAAAACC AACGGGTTGA AAAGGGGCAA
GTGTTGTTTC GCCTCGACGA TGCCATGTTT AAGGTGATGG TCGATAAGGC AAGCGCCAAA
CTGGCACAGG TCAAAACCGA TTTAGCGGTA CTCAAGGCGA GTTACCATGA GAAACAAGCC
GAAATTACCC TAGCTGAAAC CAAGTTAACC TTTGCCGAGA AAGAGCAAAA GCGGCAGGAG
AATTTAATCG GTAAACACTT TGTGTCCGAA TCTCAGCTTG AAGATGCAAG ACAAAATACC
GATATCGCGC GGCAGAATAT TCAGACCCTG CAAAAAGATT TACACCGCAT TGCCGAAAGC
TTAGGTGGCA GCCCCGATTT TCCGATTGAA CAACATCCCA GTTATTTAGA AGCTTTAGCC
CAATTAAATG AAGCCAAGCT TGATTTAAGC CGCGTGGAGA TTAAAGCCCC AGTATCAGGT
GTCGTTAGCC AACTGCCTAA GTTGGGACAA TATGTGAATG TTGGCGCCAT CGCTTTAGCG
CTGGTGGCCG ATCATGCCCT CTGGATTGAG GCTAACTTCA CCGAAACCGA TTTAACCCAC
GTCAAACCCG GACAAAAGGT CAATATCCAT ATCGATACCT TTCCCGACAA TCGCTGGCAA
GGTACGGTCG AGAGTTTAAG TCCGGCAACC GGCGCTGAGT TCTCGCTGAT CCCCGCGCAA
AATGCCACGG GCAACTGGGT GAAAATCGCC CAGCGCGTTC CGGTGCGAAT TGCCATTGAT
ACTGTGTTAC CCGAGGCGCC GCTGCGTGCC GGATTAAGCG CCGTGGTGGA TATCGATACT
GAATATCAAC GTAAGTTGTT GGGTTTTAGT CTGTGA
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| Protein sequence | MSDANPQAPQ GNMRKKRSVL LIVVPLLSVL TIGAVYLHGG RYMETDNAYV KADKVPVSAQ
VAGNVDSLYV VENQRVEKGQ VLFRLDDAMF KVMVDKASAK LAQVKTDLAV LKASYHEKQA
EITLAETKLT FAEKEQKRQE NLIGKHFVSE SQLEDARQNT DIARQNIQTL QKDLHRIAES
LGGSPDFPIE QHPSYLEALA QLNEAKLDLS RVEIKAPVSG VVSQLPKLGQ YVNVGAIALA
LVADHALWIE ANFTETDLTH VKPGQKVNIH IDTFPDNRWQ GTVESLSPAT GAEFSLIPAQ
NATGNWVKIA QRVPVRIAID TVLPEAPLRA GLSAVVDIDT EYQRKLLGFS L
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