| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1879 |
|---|
| Symbol | |
|---|
| ID | 4252453 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2237086 |
|---|
| End bp | 2237769 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 638118490 |
|---|
| Product | hemolysin III family channel protein |
|---|
| Protein accession | YP_734010 |
|---|
| Protein GI | 113970217 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1272] Predicted membrane protein, hemolysin III homolog |
|---|
| TIGRFAM ID | [TIGR01065] channel protein, hemolysin III family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAAGCC AGAGTTTGAT AGAGCCGCAA ATGAGTCATG AAAAACCATT GAATATCAGT
GGGTATAGCC TTAGTGAAGA GATAGCCAAT AGCATAAGTC ATGGCCTAGG GGTGATCGCG
GGCGTAGTAG GCTTAGTGTT TATGATCCTT AAAGGCGCCG ACCACCTCAC CAACATTCAG
CTCACAGGTG TTATTATTTA TGGTGCAAGC CTCATCCTGT TGTTTTTAAG TTCTACCTTG
TATCACAGCG TGACACACGT AGGCTGGAAA CATAAACTCA AGATTGCTGA CCATTGTGCC
ATCTACTGCT TAATTGCGGG CACTTATACG CCACTAATGT TAATCAGTCT GCAGGGAGAG
CTATCGACCA TTATCCTCAC GGCGATTTGG TCTTTGGCCA TTGGTGGCAT TCTATTTAAA
ACCTTATTTA TTCATCGCTT TAAAAAGCTC AGTCTCGTGC TCTATCTGGC GATGGGATGG
CTGTGTGTAA CTGTGATTGG CGATTTGACG GCGGCGATGT CACCGCTAGG ATTTAAGCTT
CTGCTATTGG GTGGGTTGTT TTACACCTTA GGGGTGATCT TCTATGTCGG TAAACGCATT
CCGTACAACC ATGCAATTTG GCATTTATTT GTGTTGGCGG GAGCGATGAG CCATTTCTTT
TGTATTTATT TAACCGTGAT CTAG
|
|---|
| Protein sequence | MPSQSLIEPQ MSHEKPLNIS GYSLSEEIAN SISHGLGVIA GVVGLVFMIL KGADHLTNIQ
LTGVIIYGAS LILLFLSSTL YHSVTHVGWK HKLKIADHCA IYCLIAGTYT PLMLISLQGE
LSTIILTAIW SLAIGGILFK TLFIHRFKKL SLVLYLAMGW LCVTVIGDLT AAMSPLGFKL
LLLGGLFYTL GVIFYVGKRI PYNHAIWHLF VLAGAMSHFF CIYLTVI
|
|---|
| |