| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1794 |
|---|
| Symbol | |
|---|
| ID | 4252368 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 2130124 |
|---|
| End bp | 2130897 |
|---|
| Gene Length | 774 bp |
|---|
| Protein Length | 257 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 638118405 |
|---|
| Product | imidazole glycerol phosphate synthase subunit HisF |
|---|
| Protein accession | YP_733925 |
|---|
| Protein GI | 113970132 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0107] Imidazoleglycerol-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR00735] imidazoleglycerol phosphate synthase, cyclase subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCA AACGAATAGT CCCCTGTTTA GATGTGAAAG ATGGCTGCGT GGTCAAAGGC
GTACAGTTTC GCAACCATGA AATTGTTGGC GACATAGTAC CACTCGCGGC GCGTTACGCC
GCAGAGGGCG CCGACGAACT GGTGTTTTAC GATATCACCG CCAGTGCCCA CGACCGAGTG
GTCGATAAGT CTTGGGTGAG CCGAGTGGCA GAGCAAATCG ATATCCCCTT CTGCGTCGCC
GGCGGCATTA AAACCATCGG CCAGGCCCGT GAGTTATTGG CCTTTGGCGC GGATAAGATT
TCTGTCAACT CACCCGCTCT TAGCGATCCG AGTTTAATTT CACGCCTGCA GGATGAATTT
GGCCGTCAAT GCATAGTGAT CGGCATAGAC TCTTTTTATG ATGCGGCAAG CGACAGTTAT
AAAGTAAAGC AATTTACCGG CGATGAAGCC GCCACCAAAG AAACCGCTTG GTACACTCAG
GATTGGGTCG AAGAAGTACA AAAACGCGGC TGCGGCGAAA TCGTGCTCAA CGTGATGAAC
CAAGATGGCG TGCGCGGTGG CTATGATATC AAACAGTTAA GCCTAGTACG CCAGCTGTGC
GATGTGCCCT TAATCGCCTC GGGCGGCGCT GGCACTATGG CACATTTTCG CGATGTGTTT
ATCGAGGCGA AGGTGGATGC AGCGCTGGCG GCCAGCGTGT TCCATAAAGC CATTATCAAT
ATCGGCGAGT TAAAACAGTA TTTAGCGGCC GAAGGCATCG CCATTCGCCA GTAA
|
|---|
| Protein sequence | MLAKRIVPCL DVKDGCVVKG VQFRNHEIVG DIVPLAARYA AEGADELVFY DITASAHDRV
VDKSWVSRVA EQIDIPFCVA GGIKTIGQAR ELLAFGADKI SVNSPALSDP SLISRLQDEF
GRQCIVIGID SFYDAASDSY KVKQFTGDEA ATKETAWYTQ DWVEEVQKRG CGEIVLNVMN
QDGVRGGYDI KQLSLVRQLC DVPLIASGGA GTMAHFRDVF IEAKVDAALA ASVFHKAIIN
IGELKQYLAA EGIAIRQ
|
|---|
| |