| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1701 |
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| Symbol | |
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| ID | 4252276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella sp. MR-4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008321 |
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| Strand | + |
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| Start bp | 2011679 |
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| End bp | 2013223 |
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| Gene Length | 1545 bp |
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| Protein Length | 514 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 638118313 |
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| Product | sigma-54 dependent trancsriptional regulator |
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| Protein accession | YP_733833 |
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| Protein GI | 113970040 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0309772 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATGTT TGCTTTTACT ATTGATAAAT TTAAATATTG GTTTAGGGAT GAACATAATT
AACGAAAAAG TGTTGGTTAG TTGGATTGGT GGCAACGATT TAGAATCAAA GGCGAGTAAA
ATGACTGGCC CTATATGGGC GACAGTATCT GATGTTACCT TTGATAGGCT TGAGCTTATT
TACAATTATC CGTCGGATCT AGTTACTCCA TACCTTGAAC TACTCACTGG CAATCTGAGT
TGTCCAGTCA ACGCACGTAA GGCCGATTTA TCCTCGCCAA TTAATTTTGG AGAAATTTAC
CTCGCTGCAG AACGGCTACT GGACGTTATT AGTTGTGAAA CCATTGCACT GTCTATTTTA
TTGAGTCCAG GTACACCTGC TATGCAGGCT GTATGGATAT TACTCGGTAA AACTCGATTC
GCCTGCAACT TTTATCAAGC ATCAAAAGAA CAAGGCGTTA ATATTGTAGA AATTCCTTTT
AAGCTCACTG CTGAATATAT TCCTTCGATG ACTAATCTAG CCCCTACTGA ATTTGGGCAA
CTTGGTCTAT TGGACTCTGA TGCTGATCCT GCCTTTGATG ACATTATTAC CCTTGATCCT
GAAATGTTAC TACTTAAAGC CAAGGCACAA GTTTTAGCAT CGCATGAAGT ATCTGTGCTG
ATTTGTGGTG AGAGTGGTAC CGGCAAAGAG ATGTTTGCTC GGGCAATTCA TAATGCAAGT
GCGAGAAGGG ATAAACCATT TGTTGCGGTC AATTGTGGCG CATTTCCCTC AGAACTTATT
GATTCAATAC TTTTTGGTCA TAAAAAGGGG GCTTTTACTG GTGCGGTTTC AGATAAGGTA
GGAGTTTTTG AATTGGCACA TTCAGGTACT CTTTTTTTGG ATGAGTTTGG CGAGCTTGAT
AGTTCAGCCC AAGTCAGGCT ACTTAGAGTA TTACAAGATG GTAAATTCAC TCGCTTGGGA
GATAGTAAAG AACGTAGCAG CAATTTTCGT TTGATCACAG CAACTAATCG AGACTTGATG
GCTGACGTTT CCAAGGGTAG GTTCAGGGAG GATTTATTCT ATAGGGTTGC CATTGGTGTG
TTGTCCTTAC CACCTCTAAG GTCTCGACAA AGCGATTTAG ACCATCTAGC AGATCAGTTT
ACCGCCATGC TCACACAAGA ATACCCTTCA CTAGGTGGTA AAAAAATTTC CACTGCTGCA
AAAAAAATTA TCAGTAATCA TCGTTGGCCT GGAAATATCA GAGAGCTGAA AGCAACGATT
CTTAGGGCAG CCTTATGGTC TGAAACTGCC GTATTGGAAG ACGTTGATAT ACTCAGGGCG
ATACTTTCGA CGCTCCAAAA TAGTGAGAGC ATTCTCGAAA GAGATATATC AAAAGGTGTT
GATATAAAAA GTATTATTGA TCTAGTAGAG CGGCACTATT TAGAACGAGG ATTGGCATTT
ACGTCAGGGA ATAAACGTAA AACGGCGTTG TTACTCGGCT ACAACAATCA CCAAACTTTA
AATAATCGCC TTAAAAAACT CGGCCTAGAA AACGACAATG ACTAA
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| Protein sequence | MTCLLLLLIN LNIGLGMNII NEKVLVSWIG GNDLESKASK MTGPIWATVS DVTFDRLELI
YNYPSDLVTP YLELLTGNLS CPVNARKADL SSPINFGEIY LAAERLLDVI SCETIALSIL
LSPGTPAMQA VWILLGKTRF ACNFYQASKE QGVNIVEIPF KLTAEYIPSM TNLAPTEFGQ
LGLLDSDADP AFDDIITLDP EMLLLKAKAQ VLASHEVSVL ICGESGTGKE MFARAIHNAS
ARRDKPFVAV NCGAFPSELI DSILFGHKKG AFTGAVSDKV GVFELAHSGT LFLDEFGELD
SSAQVRLLRV LQDGKFTRLG DSKERSSNFR LITATNRDLM ADVSKGRFRE DLFYRVAIGV
LSLPPLRSRQ SDLDHLADQF TAMLTQEYPS LGGKKISTAA KKIISNHRWP GNIRELKATI
LRAALWSETA VLEDVDILRA ILSTLQNSES ILERDISKGV DIKSIIDLVE RHYLERGLAF
TSGNKRKTAL LLGYNNHQTL NNRLKKLGLE NDND
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