Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Shewmr4_1590 |
Symbol | |
ID | 4252167 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella sp. MR-4 |
Kingdom | Bacteria |
Replicon accession | NC_008321 |
Strand | - |
Start bp | 1879612 |
End bp | 1880676 |
Gene Length | 1065 bp |
Protein Length | 354 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 638118203 |
Product | phospho-2-dehydro-3-deoxyheptonate aldolase |
Protein accession | YP_733724 |
Protein GI | 113969931 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0722] 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase |
TIGRFAM ID | [TIGR00034] phospho-2-dehydro-3-deoxyheptonate aldolase |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00086934 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.179227 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATTA AAACAGACGA ATTACGCACT TCCTTATTAG CTAAAGTCAT CTCACCTGCA CAACTGGCAT CTGAGTACCC GTTAACCCAA GATGCAGCCG ATTATCTCGT ACAACAACGT CGTGAAGTCG AAGCCATTAT TATGGGCGAA GATCAACGCC TATTAGTGAT CATTGGCCCC TGCTCAATCC ATGATACTCA AGCCGCCCTC GACTACGCTC GCCGTTTAGC GGTATTGCAC CAAGAGTTAA AAGACGATCT CTGCATTTTA ATGCGTGTGT ATTTTGAAAA ACCCCGCACT ATCGTCGGTT GGAAAGGGTT AATCTCCGAT CCTGATTTAG ATGGCAGCTT CGAGCCAAAT AAAGGATTAC GTATTGCCCG TGAGTTACTG CAGCAAATTA CTGAACTGAA GTTACCGATT GCCACCGAAT TTTTAGACAT GGTGAATGGT CAATATATTG CCGATTTAAT CACCTGGGGC GCTATCGGTG CCCGCACCAC CGAAAGCCAA GTTCACCGCG AAATGGCCTC GGCGCTCTCC TGCCCCGTTG GCTTTAAAAA CGGTACCGAT GGCAATATTA ATATCGCCGT CGATGCGGTG CGCGCAGCAA AAGTGCCACA TATCTTCTAT TCACCGGATA AAGATGGCGC CATGTCGGTG TATCGCACCC ATGGTAATCC TTACGGGCAT ATCATTTTAC GTGGCGGCAA AAAACCGAAT TACTTTGAGC AAGATATTGA AGAAGCAAGA TTAAAGCTTG AGTCGGTCAA TGTGACGCCG CGCGTGGTAG TCGATTTTAG CCACGGCAAC AGTGAAAAGA ACCACCTGAA GCAGCTTGTG GTTGCCGATA ATATCATGGC GCAAATGCGC GCGGGCAGCA CGGCGATTGC CGGGGTGATG GCAGAAAGTT TCTTACAGGA AGGCAATCAA AAAGTGGTTG AGGGTCAACC TCTGTGTTAC GGCCAAAGCA TCACAGATGC TTGCCTGCAT TGGGATGACT CGGAGAAATT ACTGCGCGAT CTGGCTAAAG CCTCCCGTGA TAGACGTGAG TTCCTCGGCA AATAA
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Protein sequence | MTIKTDELRT SLLAKVISPA QLASEYPLTQ DAADYLVQQR REVEAIIMGE DQRLLVIIGP CSIHDTQAAL DYARRLAVLH QELKDDLCIL MRVYFEKPRT IVGWKGLISD PDLDGSFEPN KGLRIARELL QQITELKLPI ATEFLDMVNG QYIADLITWG AIGARTTESQ VHREMASALS CPVGFKNGTD GNINIAVDAV RAAKVPHIFY SPDKDGAMSV YRTHGNPYGH IILRGGKKPN YFEQDIEEAR LKLESVNVTP RVVVDFSHGN SEKNHLKQLV VADNIMAQMR AGSTAIAGVM AESFLQEGNQ KVVEGQPLCY GQSITDACLH WDDSEKLLRD LAKASRDRRE FLGK
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