| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1377 |
|---|
| Symbol | |
|---|
| ID | 4251396 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1605823 |
|---|
| End bp | 1606494 |
|---|
| Gene Length | 672 bp |
|---|
| Protein Length | 223 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 638117976 |
|---|
| Product | pseudouridylate synthase |
|---|
| Protein accession | YP_733512 |
|---|
| Protein GI | 113969719 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.000802724 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGATAT TTGATTACCA CCCCCCTTCA GTCCCTTGGA TAGATCTTCG CTATCAAGAT
AGGGATTTGA TCATTATTAA TAAACCTTCT GGATTGTTGT CTAACCCCGG CCGAGCCGCA
CATACCTTCG ATTGTGCCCT CACCCGACTA CAACGCTTGT ATCCTGACAC CATTCTCGTG
CATCGACTCG ATTGCGCCAC TTCTGGCATT ATGGTGTTTG CCCGCAACAA AAAGGCTGAG
TCCCAGTTAA AGACCCAGTT CCAAGATAGG CAAAACGAGA AAGTGTATGT CGCCGAGGTC
ATGGGTGTGA TTGCAAAGGA TGCAGGGATA ATCGATTTAG CCATTGCGCC CGATCCCGAG
CACCCGCCCT ATCAAAAGAC TCAAATGCCG GGGACGGCTG GCGCAAAGAG TGCTCAGACC
CATTACCGAG TGCTAGAAAG ACGCGAAAAC AGCACCTTAG TCGAATTAAC GCCACAAACG
GGCCGAACCC ACCAACTGAG GGTGCATATG CTTGCCTTGG GGCATCCCAT TCTTGGGGAT
GAATTTTATG GCGATGATGA AGTGATAAAA GCCAGACCGA GACTCTGCCT TCACGCCCAA
AGTTTACGTT TTACCCATCC TTACTCGGGT AAAGCCATGC ATTTTTACAG TAAGCATCCG
TTCTCGGTTT AG
|
|---|
| Protein sequence | MQIFDYHPPS VPWIDLRYQD RDLIIINKPS GLLSNPGRAA HTFDCALTRL QRLYPDTILV
HRLDCATSGI MVFARNKKAE SQLKTQFQDR QNEKVYVAEV MGVIAKDAGI IDLAIAPDPE
HPPYQKTQMP GTAGAKSAQT HYRVLERREN STLVELTPQT GRTHQLRVHM LALGHPILGD
EFYGDDEVIK ARPRLCLHAQ SLRFTHPYSG KAMHFYSKHP FSV
|
|---|
| |