| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Shewmr4_1361 |
|---|
| Symbol | |
|---|
| ID | 4251380 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella sp. MR-4 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008321 |
|---|
| Strand | - |
|---|
| Start bp | 1583786 |
|---|
| End bp | 1585183 |
|---|
| Gene Length | 1398 bp |
|---|
| Protein Length | 465 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 638117945 |
|---|
| Product | TRAP dicarboxylate transporter, DctM subunit |
|---|
| Protein accession | YP_733496 |
|---|
| Protein GI | 113969703 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.605043 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0327101 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATTG CGACCCTCTT TACTGCCCTA CTCGTCTGTA TGTTTTTAGG TATGCCTATC
GCGATTGCGT TAGGTTTCTC AAGCATGCTG ACGATTTTAT TCTTCTCCAA CGATTCCCTC
GCCTCTGTGG CGTTAAAACT TTATGAGTCA TCGTCAGAGC ACTATACCCT GCTGGCGATC
CCCTTCTTTA TTCTGTCCTC AGCCTTCCTG TCAACCGGTG GAGTGGCACG ACGGATCATC
GATTTTGCGA TGGACAGTAT CGGCCATATC CGTGGTGGTT TAGCCATGGC CTCAGTGATG
GCCTGTATGT TGTTTGCCGC GGTGTCAGGT TCATCGCCCG CGACTGTGGC CGCCATTGGC
TCGATTGTGA TCGTCGGCAT GGTAAAAGCG GGTTATCCCG AAAAATTTGC CGCTGGCGTC
ATTACCACCT CTGGTACCTT AGGGATTTTG ATCCCACCTT CAATCGTGAT GCTAGTGTAT
GCGGCAGCGA CGGAAGTGTC GGCAGCCAGA ATGTTTATGG CGGGCTTAAT CCCAGGTTTG
ATGATGGGCT TCCTGCTGAT GATAGTGATT TATATCGTCG CCCGTTTTAA AAATCTGCCA
TCACGCCCCT TCCCCGGCTT TAAGCAACTG GGTATTTCCA GTGCCAAAGC CTTAGGTGGT
CTGGCACTTA TTCTTATCGT GTTAGGTTCA ATCTACGGCG GTGTGGCCAG TCCAACCGAA
GCCTCTGCCG TAGCCTGTAT GTATGCCTAT TTCATTGCGG TATTTGGTTA TCGCGATATC
GGCCCATTGA AAAATGTGGC TTGGCGTAAT CCTAATGAGC CCATCCCCAA CGCGATTGCC
CGTAACTTAG GCCATATGGC GCTCGGGCTG ATTAAAACCC CAATCGACAA AGAAATTCGC
CATGTTGTGC GCGACGGGGC AAAAGTCAGC ATCATGCTGC TGTTTATCAT TGCCAACGCC
ATGCTATTCG CCCACGTACT GACCACTGAG CGTATTCCCC ATATCATTGC CGAACACATT
GTTGGTATGG GCTTACCCGC TTGGGGCTTC TTAATCATTG TCAACTTACT GCTGTTAGCG
GCGGGTAACT TTATGGAGCC ATCAGCCATC GTGTTGATTA TGGCGCCGAT TTTGTTCCCG
ATTGCCACTC ACTTAGGTAT CGATCCTATT CACTTAGGTA TCATCATGGT GGTAAACATG
GAGATTGGTA TGCTGACGCC GCCGGTGGGG CTTAACCTCT TCGTGACGGC GGGGATCACA
GGCCGCAGTA TCGGCTGGGT GATCCAATCT GTACTGCCGT GGTTAGCACT GATGTTGGCC
TTCTTGGCAC TTATCACCTA TGTGCCACAA ATCTCCCTGT TCTTGCCGGA ATTTCTGGAT
AAGCTCAACG GATATTAA
|
|---|
| Protein sequence | MAIATLFTAL LVCMFLGMPI AIALGFSSML TILFFSNDSL ASVALKLYES SSEHYTLLAI
PFFILSSAFL STGGVARRII DFAMDSIGHI RGGLAMASVM ACMLFAAVSG SSPATVAAIG
SIVIVGMVKA GYPEKFAAGV ITTSGTLGIL IPPSIVMLVY AAATEVSAAR MFMAGLIPGL
MMGFLLMIVI YIVARFKNLP SRPFPGFKQL GISSAKALGG LALILIVLGS IYGGVASPTE
ASAVACMYAY FIAVFGYRDI GPLKNVAWRN PNEPIPNAIA RNLGHMALGL IKTPIDKEIR
HVVRDGAKVS IMLLFIIANA MLFAHVLTTE RIPHIIAEHI VGMGLPAWGF LIIVNLLLLA
AGNFMEPSAI VLIMAPILFP IATHLGIDPI HLGIIMVVNM EIGMLTPPVG LNLFVTAGIT
GRSIGWVIQS VLPWLALMLA FLALITYVPQ ISLFLPEFLD KLNGY
|
|---|
| |